ENSG00000169564


Homo sapiens

Features
Gene ID: ENSG00000169564
  
Biological name :PCBP1
  
Synonyms : PCBP1 / poly(rC) binding protein 1 / Q15365
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p13.3
Gene start: 70087454
Gene end: 70089203
  
Corresponding Affymetrix probe sets: 208620_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000305556
NCBI entrez gene - 5093     See in Manteia.
OMIM - 601209
RefSeq - NM_006196
RefSeq Peptide - NP_006187
swissprot - Q15365
swissprot - Q53SS8
Ensembl - ENSG00000169564
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zgc:110045ENSDARG00000110961Danio rerio
 ENSGALG00000041030Gallus gallus
 Pcbp1ENSMUSG00000051695Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCBP2 / Q15366 / poly(rC) binding protein 2ENSG0000019711185
PCBP3 / P57721 / poly(rC) binding protein 3ENSG0000018357067
PCBP4 / P57723 / poly(rC) binding protein 4ENSG0000009009752
HNRNPK / P61978 / heterogeneous nuclear ribonucleoprotein KENSG0000016511931
NOVA2 / Q9UNW9 / NOVA alternative splicing regulator 2ENSG0000010496728
NOVA1 / P51513 / NOVA alternative splicing regulator 1ENSG0000013991027


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR036612  K Homology domain, type 1 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0016070 RNA metabolic process TAS
 biological_processGO:0039694 viral RNA genome replication IDA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0036464 cytoplasmic ribonucleoprotein granule IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding IEA
 molecular_functionGO:0003723 RNA binding IDA
 molecular_functionGO:0003729 mRNA binding IDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0045296 cadherin binding IDA
 molecular_functionGO:0098847 sequence-specific single stranded DNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
Processing of Capped Intron-Containing Pre-mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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