ENSDARG00000110961


Danio rerio

Features
Gene ID: ENSDARG00000110961
  
Biological name :zgc:110045
  
Synonyms : zgc:110045
  
Possible biological names infered from orthology : P60335 / PCBP1 / PCBP2 / poly(rC) binding protein 1 / poly(rC) binding protein 2 / Q15365 / Q15366 / Q61990
  
Species: Danio rerio
  
Chr. number: 13
Strand: -1
Band:
Gene start: 16219082
Gene end: 16226312
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000134112
Ensembl peptide - ENSDARP00000146232
swissprot - A0A0R4IH93
ZFIN ID - ZDB-GENE-050706-149
Ensembl - ENSDARG00000110961
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000041030Gallus gallus
 PCBP1ENSG00000169564Homo sapiens
 PCBP2ENSG00000197111Homo sapiens
 Pcbp1ENSMUSG00000051695Mus musculus
 Pcbp2ENSMUSG00000056851Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcbp4 / poly(rC) binding protein 4 / P57723*ENSDARG0000002427648
pcbp2 / poly(rC) binding protein 2ENSDARG0000009903931
pcbp3 / poly(rC) binding protein 3 / P57721* / P57722* / Mus musculus poly(rC) binding protein 3 (Pcbp3), transcript variant 2, mRNA.*ENSDARG0000005437829
nova2 / neuro-oncological ventral antigen 2 / Q9UNW9* / NOVA alternative splicing regulator 2*ENSDARG0000001767317
nova1 / neuro-oncological ventral antigen 1 / NOVA2* / Q9UNW9* / NOVA alternative splicing regulator 2*ENSDARG0000002017817
hnrpkl / heterogeneous nuclear ribonucleoprotein K, like / P61979* / HNRNPK* / P61978* / Heteroous nuclear ribonucleoprotein K * / heterogeneous nuclear ribonucleoprotein K*ENSDARG0000000703417
hnrnpk / heterogeneous nuclear ribonucleoprotein K / P61978* / P61979* / Heteroous nuclear ribonucleoprotein K *ENSDARG0000001891416
zgc:110045ENSDARG000000571415


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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