ENSDARG00000007034


Danio rerio

Features
Gene ID: ENSDARG00000007034
  
Biological name :hnrpkl
  
Synonyms : heterogeneous nuclear ribonucleoprotein K, like / hnrpkl
  
Possible biological names infered from orthology : heterogeneous nuclear ribonucleoprotein K / Heteroous nuclear ribonucleoprotein K / HNRNPK / P61978 / P61979
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 55602720
Gene end: 55625247
  
Corresponding Affymetrix probe sets: Dr.24225.1.S1_at (Zebrafish Array)   NM_212991_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000116598
Ensembl peptide - ENSDARP00000144315
Ensembl peptide - ENSDARP00000008648
Ensembl peptide - ENSDARP00000114704
NCBI entrez gene - 406264     See in Manteia.
RefSeq - NM_212991
RefSeq Peptide - NP_998156
swissprot - B8JLJ8
swissprot - F6PB84
swissprot - Q7ZUT0
ZFIN ID - ZDB-GENE-040426-1923
Ensembl - ENSDARG00000007034
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000012591Gallus gallus
 Q5ZIQ3ENSGALG00000040086Gallus gallus
 HNRNPKENSG00000165119Homo sapiens
 HnrnpkENSMUSG00000021546Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hnrnpk / heterogeneous nuclear ribonucleoprotein K / P61978* / P61979* / Heteroous nuclear ribonucleoprotein K *ENSDARG0000001891472
pcbp3 / poly(rC) binding protein 3 / P57721* / P57722* / Mus musculus poly(rC) binding protein 3 (Pcbp3), transcript variant 2, mRNA.*ENSDARG0000005437824
pcbp4 / poly(rC) binding protein 4 / P57723*ENSDARG0000002427624
nova1 / neuro-oncological ventral antigen 1 / NOVA2* / Q9UNW9* / NOVA alternative splicing regulator 2*ENSDARG0000002017823
pcbp2 / poly(rC) binding protein 2ENSDARG0000009903923
nova2 / neuro-oncological ventral antigen 2 / Q9UNW9* / NOVA alternative splicing regulator 2*ENSDARG0000001767322
zgc:110045ENSDARG0000005714114
zgc:110045 / PCBP2* / PCBP1* / Q15365* / Q15366* / poly(rC) binding protein 1* / poly(rC) binding protein 2*ENSDARG000001109619


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR012987  ROK, N-terminal
 IPR033090  Heterogeneous nuclear ribonucleoprotein K


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006396 RNA processing IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
SUMOylation of RNA binding proteins
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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