ENSGALG00000040086


Gallus gallus

Features
Gene ID: ENSGALG00000040086
  
Biological name :HNRNPKL
  
Synonyms : Heterogeneous nuclear ribonucleoprotein K / HNRNPKL / Q5ZIQ3
  
Possible biological names infered from orthology : Heteroous nuclear ribonucleoprotein K / HNRNPK / P61978 / P61979
  
Species: Gallus gallus
  
Chr. number: W
Strand: -1
Band:
Gene start: 3066295
Gene end: 3085742
  
Corresponding Affymetrix probe sets: Gga.19575.1.A1_at (Chicken Array)   Gga.19575.1.S1_at (Chicken Array)   Gga.4811.3.S1_s_at (Chicken Array)   GgaAffx.12834.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000060368
Ensembl peptide - ENSGALP00000047968
NCBI entrez gene - 426516     See in Manteia.
RefSeq - XM_015300430
RefSeq - NM_001031385
RefSeq - XM_015300427
RefSeq - XM_015300428
RefSeq - XM_015300429
RefSeq - XM_015300424
RefSeq - XM_015300425
RefSeq - XM_015300426
RefSeq Peptide - NP_001026556
swissprot - Q5ZIQ3
swissprot - A0A1L1RNL4
Ensembl - ENSGALG00000040086
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnrnpkENSDARG00000018914Danio rerio
 hnrpklENSDARG00000007034Danio rerio
 HNRNPKENSG00000165119Homo sapiens
 HnrnpkENSMUSG00000021546Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HNRNPK* / P61978* / P61979* / Heteroous nuclear ribonucleoprotein K * / heterogeneous nuclear ribonucleoprotein K*ENSGALG0000001259198
PCBP3 / poly(rC) binding protein 3 / P57721* / P57722* / Mus musculus poly(rC) binding protein 3 (Pcbp3), transcript variant 2, mRNA.*ENSGALG0000000439426
NOVA1 / NOVA alternative splicing regulator 1 / P51513* / Q9JKN6* / RNA-binding protein Nova-1 *ENSGALG0000000985024
PCBP4 / poly(rC) binding protein 4 / P57723*ENSGALG0000002769521
PCBP2* / PCBP1* / Q15366* / P60335* / Q15365* / poly(rC) binding protein 1* / poly(rC) binding protein 2*ENSGALG0000004103021
ENSGALG0000001315514


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR012987  ROK, N-terminal
 IPR033090  Heterogeneous nuclear ribonucleoprotein K


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
SUMOylation of RNA binding proteins
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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