ENSG00000165119


Homo sapiens

Features
Gene ID: ENSG00000165119
  
Biological name :HNRNPK
  
Synonyms : heterogeneous nuclear ribonucleoprotein K / HNRNPK / P61978
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: q21.32
Gene start: 83968083
Gene end: 83980616
  
Corresponding Affymetrix probe sets: 200097_s_at (Human Genome U133 Plus 2.0 Array)   200775_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000475098
Ensembl peptide - ENSP00000317788
Ensembl peptide - ENSP00000353552
Ensembl peptide - ENSP00000365439
Ensembl peptide - ENSP00000365458
Ensembl peptide - ENSP00000409456
Ensembl peptide - ENSP00000473957
NCBI entrez gene - 3190     See in Manteia.
OMIM - 600712
RefSeq - XM_017014669
RefSeq - NM_001318186
RefSeq - NM_001318187
RefSeq - NM_001318188
RefSeq - NM_002140
RefSeq - NM_031262
RefSeq - NM_031263
RefSeq - XM_005251960
RefSeq - XM_005251963
RefSeq - XM_005251965
RefSeq - XM_011518616
RefSeq - XM_017014668
RefSeq Peptide - NP_112553
RefSeq Peptide - NP_001305116
RefSeq Peptide - NP_001305117
RefSeq Peptide - NP_002131
RefSeq Peptide - NP_112552
RefSeq Peptide - NP_001305115
swissprot - Q5T6W2
swissprot - S4R359
swissprot - S4R457
swissprot - P61978
Ensembl - ENSG00000165119
  
Related genetic diseases (OMIM): 616580 - Au-Kline syndrome, 616580
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hnrnpkENSDARG00000018914Danio rerio
 hnrpklENSDARG00000007034Danio rerio
 ENSGALG00000012591Gallus gallus
 Q5ZIQ3ENSGALG00000040086Gallus gallus
 HnrnpkENSMUSG00000021546Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PCBP2 / Q15366 / poly(rC) binding protein 2ENSG0000019711126
PCBP3 / P57721 / poly(rC) binding protein 3ENSG0000018357025
NOVA2 / Q9UNW9 / NOVA alternative splicing regulator 2ENSG0000010496724
PCBP1 / Q15365 / poly(rC) binding protein 1ENSG0000016956424
NOVA1 / P51513 / NOVA alternative splicing regulator 1ENSG0000013991023
PCBP4 / P57723 / poly(rC) binding protein 4ENSG0000009009721


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR012987  ROK, N-terminal
 IPR033090  Heterogeneous nuclear ribonucleoprotein K
 IPR036612  K Homology domain, type 1 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006396 RNA processing TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007165 signal transduction TAS
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0010988 regulation of low-density lipoprotein particle clearance IMP
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016070 RNA metabolic process TAS
 biological_processGO:0043066 negative regulation of apoptotic process IMP
 biological_processGO:0045716 positive regulation of low-density lipoprotein particle receptor biosynthetic process IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome IEA
 biological_processGO:0048260 positive regulation of receptor-mediated endocytosis IMP
 biological_processGO:0072369 regulation of lipid transport by positive regulation of transcription from RNA polymerase II promoter IMP
 biological_processGO:1902165 regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator IEA
 cellular_componentGO:0000790 nuclear chromatin IDA
 cellular_componentGO:0002102 podosome IEA
 cellular_componentGO:0005634 nucleus TAS
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IDA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IMP
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IMP
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003697 single-stranded DNA binding TAS
 molecular_functionGO:0003723 RNA binding TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019904 protein domain specific binding IPI
 molecular_functionGO:0042802 identical protein binding IPI
 molecular_functionGO:0045296 cadherin binding IDA


Pathways (from Reactome)
Pathway description
SUMOylation of RNA binding proteins
mRNA Splicing - Major Pathway
Processing of Capped Intron-Containing Pre-mRNA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000194 Open mouth 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000268 Dolichocephaly 
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 HP:0000276 Long face 
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 HP:0000430 Hypoplastic nasal alae "Thinned, deficient, or excessively arched `ala nasi` (FMA:59519)." [pmid:19152422]
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 HP:0000474 Excess nuchal skin 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000637 Wide palpebral fissures 
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 HP:0000677 Oligodontia "The condition of missing over 6 teeth (Missing up to 6 teeth is referred to a hypodontia)." [HPO:curators]
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000960 Sacral dimple "A subtype of `skin dimples` (HP:0010781) presenting as an indentation in the skin of the intergluteal cleft ." [HPO:probinson]
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001363 Craniosynostosis "Craniosynostosis refers to the premature closure of the cranial sutures. Primary craniosynostosis refers to the closure of one or more sutures due to abnormalities in skull development, and secondary craniosynostosis results from failure of brain growth." [HPO:curators]
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 HP:0001385 Hip dysplasia 
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 HP:0001845 Overriding toes "A congenital condition in which a toe is adducted, dorsifelxed, and medially deviated, generally lying over the metatarsal phalangeal joint of the adjacent toe. Usually, the fifth toe is affected." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002465 Poor speech 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0003186 Inverted nipples "The presence of nipples that instead of pointing outward are retracted inwards." [HPO:sdoelken]
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 HP:0005338 Sparse lateral eyebrows 
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 HP:0006610 Wide intermamillary distance 
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 HP:0008551 Underdeveloped ears 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012811 Wide nasal ridge "Increased width of the nasal ridge." [HPO:probinson, pmid:19152422]
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 HP:0100259 Postaxial polydactyly "A form of polydactyly in which the extra digit or digits are localized on the side of the fifth finger or fifth toe." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000188612 SUMO2 / P61956 / small ubiquitin-like modifier 2  / reaction
 ENSG00000103275 UBE2I / P63279 / ubiquitin conjugating enzyme E2 I  / reaction






 

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