ENSDARG00000018914


Danio rerio

Features
Gene ID: ENSDARG00000018914
  
Biological name :hnrnpk
  
Synonyms : heterogeneous nuclear ribonucleoprotein K / hnrnpk
  
Possible biological names infered from orthology : Heteroous nuclear ribonucleoprotein K / P61978 / P61979
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 49744801
Gene end: 49766241
  
Corresponding Affymetrix probe sets: Dr.24995.3.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000122449
Ensembl peptide - ENSDARP00000146195
Ensembl peptide - ENSDARP00000144257
Ensembl peptide - ENSDARP00000088691
Ensembl peptide - ENSDARP00000117204
Ensembl peptide - ENSDARP00000120947
NCBI entrez gene - 406267     See in Manteia.
RefSeq - NM_212994
RefSeq - XM_005167319
RefSeq - XM_009304280
RefSeq Peptide - NP_998159
swissprot - E9QGT0
swissprot - B0UXJ3
swissprot - F1QAZ9
swissprot - F1QWB4
ZFIN ID - ZDB-GENE-040426-1926
Ensembl - ENSDARG00000018914
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000012591Gallus gallus
 Q5ZIQ3ENSGALG00000040086Gallus gallus
 HNRNPKENSG00000165119Homo sapiens
 HnrnpkENSMUSG00000021546Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
hnrpkl / heterogeneous nuclear ribonucleoprotein K, like / P61979* / HNRNPK* / P61978* / Heteroous nuclear ribonucleoprotein K * / heterogeneous nuclear ribonucleoprotein K*ENSDARG0000000703473
pcbp3 / poly(rC) binding protein 3 / P57721* / P57722* / Mus musculus poly(rC) binding protein 3 (Pcbp3), transcript variant 2, mRNA.*ENSDARG0000005437824
pcbp2 / poly(rC) binding protein 2ENSDARG0000009903923
pcbp4 / poly(rC) binding protein 4 / P57723*ENSDARG0000002427622
nova1 / neuro-oncological ventral antigen 1 / NOVA2* / Q9UNW9* / NOVA alternative splicing regulator 2*ENSDARG0000002017820
nova2 / neuro-oncological ventral antigen 2 / Q9UNW9* / NOVA alternative splicing regulator 2*ENSDARG0000001767320
zgc:110045ENSDARG0000005714114
zgc:110045 / PCBP2* / PCBP1* / Q15365* / Q15366* / poly(rC) binding protein 1* / poly(rC) binding protein 2*ENSDARG000001109618


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR012987  ROK, N-terminal
 IPR033090  Heterogeneous nuclear ribonucleoprotein K


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006396 RNA processing IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
SUMOylation of RNA binding proteins
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr