ENSDARG00000054378


Danio rerio

Features
Gene ID: ENSDARG00000054378
  
Biological name :pcbp3
  
Synonyms : pcbp3 / poly(rC) binding protein 3
  
Possible biological names infered from orthology : Mus musculus poly(rC) binding protein 3 (Pcbp3), transcript variant 2, mRNA. / P57721 / P57722
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 42040557
Gene end: 42127228
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000115582
Ensembl peptide - ENSDARP00000146158
Ensembl peptide - ENSDARP00000122845
Ensembl peptide - ENSDARP00000116994
Ensembl peptide - ENSDARP00000016097
Ensembl peptide - ENSDARP00000048892
NCBI entrez gene - 553765     See in Manteia.
RefSeq - NM_001328142
RefSeq - NM_001020731
RefSeq Peptide - NP_001018567
RefSeq Peptide - NP_001315071
swissprot - Q504B8
swissprot - E7FD26
swissprot - A8WHQ1
swissprot - A8WHQ0
swissprot - F1QQV4
ZFIN ID - ZDB-GENE-050522-157
Ensembl - ENSDARG00000054378
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PCBP3ENSGALG00000004394Gallus gallus
 PCBP3ENSG00000183570Homo sapiens
 Pcbp3ENSMUSG00000001120Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcbp2 / poly(rC) binding protein 2ENSDARG0000009903971
pcbp4 / poly(rC) binding protein 4 / P57723*ENSDARG0000002427661
zgc:110045ENSDARG0000005714147
nova2 / neuro-oncological ventral antigen 2 / Q9UNW9* / NOVA alternative splicing regulator 2*ENSDARG0000001767330
hnrpkl / heterogeneous nuclear ribonucleoprotein K, like / P61979* / HNRNPK* / P61978* / Heteroous nuclear ribonucleoprotein K * / heterogeneous nuclear ribonucleoprotein K*ENSDARG0000000703430
nova1 / neuro-oncological ventral antigen 1 / NOVA2* / Q9UNW9* / NOVA alternative splicing regulator 2*ENSDARG0000002017829
hnrnpk / heterogeneous nuclear ribonucleoprotein K / P61978* / P61979* / Heteroous nuclear ribonucleoprotein K *ENSDARG0000001891429
zgc:110045 / PCBP2* / PCBP1* / Q15365* / Q15366* / poly(rC) binding protein 1* / poly(rC) binding protein 2*ENSDARG0000011096119


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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