ENSDARG00000024276


Danio rerio

Features
Gene ID: ENSDARG00000024276
  
Biological name :pcbp4
  
Synonyms : pcbp4 / poly(rC) binding protein 4
  
Possible biological names infered from orthology : P57723
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 32289567
Gene end: 32507966
  
Corresponding Affymetrix probe sets: Dr.5325.1.A1_at (Zebrafish Array)   NM_213117_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000118901
Ensembl peptide - ENSDARP00000095464
Ensembl peptide - ENSDARP00000123850
Ensembl peptide - ENSDARP00000124370
NCBI entrez gene - 406391     See in Manteia.
RefSeq - NM_213117
RefSeq Peptide - NP_998282
swissprot - F1Q8M8
swissprot - A0A0J9YJ03
swissprot - F8W4X8
swissprot - Q7SZN9
ZFIN ID - ZDB-GENE-040426-2122
Ensembl - ENSDARG00000024276
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PCBP4ENSGALG00000027695Gallus gallus
 PCBP4ENSG00000090097Homo sapiens
 Pcbp4ENSMUSG00000023495Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pcbp3 / poly(rC) binding protein 3 / P57721* / P57722* / Mus musculus poly(rC) binding protein 3 (Pcbp3), transcript variant 2, mRNA.*ENSDARG0000005437846
pcbp2 / poly(rC) binding protein 2ENSDARG0000009903945
zgc:110045ENSDARG0000005714132
zgc:110045 / PCBP2* / PCBP1* / Q15365* / Q15366* / poly(rC) binding protein 1* / poly(rC) binding protein 2*ENSDARG0000011096124
hnrpkl / heterogeneous nuclear ribonucleoprotein K, like / P61979* / HNRNPK* / P61978* / Heteroous nuclear ribonucleoprotein K * / heterogeneous nuclear ribonucleoprotein K*ENSDARG0000000703422
nova2 / neuro-oncological ventral antigen 2 / Q9UNW9* / NOVA alternative splicing regulator 2*ENSDARG0000001767321
nova1 / neuro-oncological ventral antigen 1 / NOVA2* / Q9UNW9* / NOVA alternative splicing regulator 2*ENSDARG0000002017821
hnrnpk / heterogeneous nuclear ribonucleoprotein K / P61978* / P61979* / Heteroous nuclear ribonucleoprotein K *ENSDARG0000001891420


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR015946  K homology domain-like, alpha/beta
 IPR033088  Poly(rC)-binding protein 4


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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