ENSDARG00000017673


Danio rerio

Features
Gene ID: ENSDARG00000017673
  
Biological name :nova2
  
Synonyms : neuro-oncological ventral antigen 2 / nova2
  
Possible biological names infered from orthology : NOVA alternative splicing regulator 2 / Q9UNW9
  
Species: Danio rerio
  
Chr. number: 15
Strand: 1
Band:
Gene start: 28685625
Gene end: 28766824
  
Corresponding Affymetrix probe sets: Dr.16955.1.A1_at (Zebrafish Array)   Dr.25658.1.S1_at (Zebrafish Array)   Dr.6502.1.A1_at (Zebrafish Array)   Dr.6502.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000135255
Ensembl peptide - ENSDARP00000151685
Ensembl peptide - ENSDARP00000060243
Ensembl peptide - ENSDARP00000127510
NCBI entrez gene - 553201     See in Manteia.
RefSeq - NM_001309524
RefSeq Peptide - NP_001296453
swissprot - A0A0R4ILY0
swissprot - F1R4G7
swissprot - X1WBB9
ZFIN ID - ZDB-GENE-080211-1
Ensembl - ENSDARG00000017673
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NOVA2ENSG00000104967Homo sapiens
 Nova2ENSMUSG00000030411Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
nova1 / neuro-oncological ventral antigen 1 / NOVA2* / Q9UNW9* / NOVA alternative splicing regulator 2*ENSDARG0000002017886
pcbp3 / poly(rC) binding protein 3 / P57721* / P57722* / Mus musculus poly(rC) binding protein 3 (Pcbp3), transcript variant 2, mRNA.*ENSDARG0000005437820
hnrpkl / heterogeneous nuclear ribonucleoprotein K, like / P61979* / HNRNPK* / P61978* / Heteroous nuclear ribonucleoprotein K * / heterogeneous nuclear ribonucleoprotein K*ENSDARG0000000703419
pcbp4 / poly(rC) binding protein 4 / P57723*ENSDARG0000002427619
pcbp2 / poly(rC) binding protein 2ENSDARG0000009903918
hnrnpk / heterogeneous nuclear ribonucleoprotein K / P61978* / P61979* / Heteroous nuclear ribonucleoprotein K *ENSDARG0000001891416
zgc:110045ENSDARG0000005714112
zgc:110045 / PCBP2* / PCBP1* / Q15365* / Q15366* / poly(rC) binding protein 1* / poly(rC) binding protein 2*ENSDARG000001109618


Protein motifs (from Interpro)
Interpro ID Name
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR033086  RNA-binding protein Nova-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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