ENSGALG00000010501


Gallus gallus

Features
Gene ID: ENSGALG00000010501
  
Biological name :SNW1
  
Synonyms : SNW1 / SNW domain containing 1
  
Possible biological names infered from orthology : Q13573
  
Species: Gallus gallus
  
Chr. number: 5
Strand: -1
Band:
Gene start: 39405342
Gene end: 39422378
  
Corresponding Affymetrix probe sets: Gga.3344.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000017080
NCBI entrez gene - 423381     See in Manteia.
RefSeq - XM_421294
swissprot - F1NNJ3
Ensembl - ENSGALG00000010501
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snw1ENSDARG00000091563Danio rerio
 SNW1ENSG00000100603Homo sapiens
 Snw1ENSMUSG00000021039Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004015  SKI-interacting protein SKIP, SNW domain
 IPR017862  SKI-interacting protein, SKIP


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000350 generation of catalytic spliceosome for second transesterification step IBA
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IBA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0071013 catalytic step 2 spliceosome IBA
 cellular_componentGO:0071014 post-mRNA release spliceosomal complex IBA
 cellular_componentGO:0071141 SMAD protein complex IBA
 molecular_functionGO:0003712 transcription coregulator activity IBA


Pathways (from Reactome)
Pathway description
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
mRNA Splicing - Major Pathway
RUNX3 regulates NOTCH signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000002375 NOTCH1 / P46531* / Q01705* / Neurogenic locus notch homolog protein 1 Notch 1 extracellular truncation Notch 1 intracellular domain*  / complex
 ENSGALG00000008593 ATP1B4 / Q2HZ96 / Protein ATP1B4 / Q99ME6* / Q9UN42* / ATPase Na+/K+ transporting family member beta 4*  / complex / reaction






 

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