ENSDARG00000091563


Danio rerio

Features
Gene ID: ENSDARG00000091563
  
Biological name :snw1
  
Synonyms : snw1 / SNW domain containing 1
  
Possible biological names infered from orthology : Q13573
  
Species: Danio rerio
  
Chr. number: 20
Strand: -1
Band:
Gene start: 5378841
Gene end: 5400395
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000138373
NCBI entrez gene - 321852     See in Manteia.
swissprot - Q6DRP3
ZFIN ID - ZDB-GENE-030131-571
Ensembl - ENSDARG00000091563
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNW1ENSGALG00000010501Gallus gallus
 SNW1ENSG00000100603Homo sapiens
 Snw1ENSMUSG00000021039Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004015  SKI-interacting protein SKIP, SNW domain
 IPR017862  SKI-interacting protein, SKIP


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0014029 neural crest formation IMP
 biological_processGO:0030513 positive regulation of BMP signaling pathway IMP
 cellular_componentGO:0005681 spliceosomal complex IEA


Pathways (from Reactome)
Pathway description
SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
mRNA Splicing - Major Pathway
RUNX3 regulates NOTCH signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000008 brain brain necrotic , abnormal
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 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
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 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism wholly dorsalized , abnormal
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 ZFA:0001114 head head flat , abnormal
head necrotic , abnormal
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 ZFA:0009165 neural crest cell neural crest cell decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000003398 rbpja / recombination signal binding protein for immunoglobulin kappa J region a / RBPJ* / Q06330* / recombination signal binding protein for immunoglobulin kappa J region*  / complex
 ENSDARG00000052091 rbpjb / recombination signal binding protein for immunoglobulin kappa J region b / RBPJ* / Q06330* / P31266* / Recombining binding protein suppressor of hairless * / recombination signal bi...  / complex
 ENSDARG00000053262 atp1b4 / ATPase Na+/K+ transporting subunit beta 4 / Q99ME6* / Q9UN42* / Protein ATP1B4 * / ATPase Na+/K+ transporting family member beta 4*  / complex / reaction






 

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