ENSGALG00000015935


Gallus gallus

Features
Gene ID: ENSGALG00000015935
  
Biological name :SMYD1
  
Synonyms : histone-lysine N-methyltransferase SMYD1 / SMYD1
  
Possible biological names infered from orthology : P97443 / Q8NB12 / SET and MYND domain containing 1
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 86507298
Gene end: 86529540
  
Corresponding Affymetrix probe sets: Gga.4220.1.S1_a_at (Chicken Array)   Gga.4220.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000060798
Ensembl peptide - ENSGALP00000025636
Ensembl peptide - ENSGALP00000025637
NCBI entrez gene - 373960     See in Manteia.
RefSeq - XM_015285868
RefSeq - NM_204155
RefSeq Peptide - NP_989486
swissprot - F1P5R8
swissprot - A0A1L1RPT1
swissprot - F1P5R7
Ensembl - ENSGALG00000015935
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smyd1aENSDARG00000009280Danio rerio
 smyd1bENSDARG00000091253Danio rerio
 SMYD1ENSG00000115593Homo sapiens
 Smyd1ENSMUSG00000055027Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMYD2 / SET and MYND domain containing 2 / Q8R5A0* / Q9NRG4* / N-lysine methyltransferase SMYD2 *ENSGALG0000000978827
SMYD3 / SET and MYND domain containing 3 / Q9CWR2* / Q9H7B4* / Histone-lysine N-methyltransferase SMYD3 *ENSGALG0000001065315


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR002893  Zinc finger, MYND-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0010831 positive regulation of myotube differentiation IEA
 biological_processGO:0035914 skeletal muscle cell differentiation IEA
 biological_processGO:0045663 positive regulation of myoblast differentiation IEA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003714 transcription corepressor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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