ENSG00000115593


Homo sapiens

Features
Gene ID: ENSG00000115593
  
Biological name :SMYD1
  
Synonyms : Q8NB12 / SET and MYND domain containing 1 / SMYD1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: 1
Band: p11.2
Gene start: 88067780
Gene end: 88113387
  
Corresponding Affymetrix probe sets: 228406_at (Human Genome U133 Plus 2.0 Array)   243045_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000387482
Ensembl peptide - ENSP00000407888
Ensembl peptide - ENSP00000393453
NCBI entrez gene - 150572     See in Manteia.
OMIM - 606846
RefSeq - NM_198274
RefSeq - XM_005264156
RefSeq Peptide - NP_001317293
RefSeq Peptide - NP_938015
swissprot - C9JUP3
swissprot - Q8NB12
swissprot - E9PHG3
Ensembl - ENSG00000115593
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 smyd1aENSDARG00000009280Danio rerio
 smyd1bENSDARG00000091253Danio rerio
 SMYD1ENSGALG00000015935Gallus gallus
 Smyd1ENSMUSG00000055027Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SMYD2 / Q9NRG4 / SET and MYND domain containing 2ENSG0000014349927
SMYD3 / Q9H7B4 / SET and MYND domain containing 3ENSG0000018542027


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR002893  Zinc finger, MYND-type
 IPR036388  Winged helix-like DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0007507 heart development IEA
 biological_processGO:0010831 positive regulation of myotube differentiation IDA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0034968 histone lysine methylation IEA
 biological_processGO:0035914 skeletal muscle cell differentiation IEA
 biological_processGO:0045663 positive regulation of myoblast differentiation IDA
 biological_processGO:0045892 negative regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003714 transcription corepressor activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0018024 histone-lysine N-methyltransferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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