ENSDARG00000009280


Danio rerio

Features
Gene ID: ENSDARG00000009280
  
Biological name :smyd1a
  
Synonyms : SET and MYND domain containing 1a / smyd1a
  
Possible biological names infered from orthology : P97443 / Q8NB12 / SET and MYND domain containing 1 / SMYD1
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 72106837
Gene end: 72126424
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000027046
Ensembl peptide - ENSDARP00000123858
swissprot - A0A0R4ID41
swissprot - F1QDG9
swissprot - F8W4X0
ZFIN ID - ZDB-GENE-030131-9825
Ensembl - ENSDARG00000009280
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SMYD1ENSGALG00000015935Gallus gallus
 SMYD1ENSG00000115593Homo sapiens
 Smyd1ENSMUSG00000055027Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
smyd1b / SET and MYND domain containing 1b / SMYD1* / P97443* / Q8NB12* / SET and MYND domain containing 1*ENSDARG0000009125359
smyd3 / SET and MYND domain containing 3 / Q9CWR2* / Q9H7B4* / Histone-lysine N-methyltransferase SMYD3 *ENSDARG0000005805027
smyd2a / SET and MYND domain containing 2a / SMYD2* / Q8R5A0* / Q9NRG4* / SET and MYND domain containing 2* / N-lysine methyltransferase SMYD2 *ENSDARG0000005515125
Q5RGL7 / smyd2b / SET and MYND domain containing 2b / SMYD2* / Q8R5A0* / Q9NRG4* / SET and MYND domain containing 2* / N-lysine methyltransferase SMYD2 *ENSDARG0000000562925


Protein motifs (from Interpro)
Interpro ID Name
 IPR001214  SET domain
 IPR002893  Zinc finger, MYND-type
 IPR011990  Tetratricopeptide-like helical domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030240 skeletal muscle thin filament assembly IGI
 biological_processGO:0030241 skeletal muscle myosin thick filament assembly IGI
 biological_processGO:0045214 sarcomere organization IGI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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