ENSGALG00000016198


Gallus gallus

Features
Gene ID: ENSGALG00000016198
  
Biological name :U2AF1
  
Synonyms : U2AF1
  
Possible biological names infered from orthology : P0DN76 / Q01081 / Q9D883 / U2AF1L5 / U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 / U2 small nuclear RNA auxiliary factor 1 / U2 small nuclear RNA auxiliary factor 1 like 5
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 109739113
Gene end: 109754964
  
Corresponding Affymetrix probe sets: Gga.10605.1.A1_at (Chicken Array)   Gga.10605.1.S1_at (Chicken Array)   Gga.4951.1.S1_a_at (Chicken Array)   Gga.4951.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000054236
Ensembl peptide - ENSGALP00000059466
Ensembl peptide - ENSGALP00000026067
Ensembl peptide - ENSGALP00000047345
NCBI entrez gene - 395370     See in Manteia.
RefSeq - XM_015300318
RefSeq - NM_204655
RefSeq - XM_015300286
RefSeq - XM_015300294
RefSeq - XM_015300303
RefSeq - XM_015300310
RefSeq Peptide - NP_989986
swissprot - A0A1D5PMZ8
swissprot - A0A1D5P3U0
swissprot - Q98SE2
swissprot - Q98TR0
Ensembl - ENSGALG00000016198
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 u2af1ENSDARG00000015325Danio rerio
 P0DN76ENSG00000275895Homo sapiens
 U2AF1ENSG00000160201Homo sapiens
 U2af1ENSMUSG00000061613Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ZRSR2 / zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 / Zrsr1* / Q15696* / Q64707* / zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1*ENSGALG0000001655235


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000571  Zinc finger, CCCH-type
 IPR003954  RNA recognition motif domain, eukaryote
 IPR009145  U2 auxiliary factor small subunit
 IPR012677  Nucleotide-binding alpha-beta plait domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0089701 U2AF IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0030628 pre-mRNA 3"-splice site binding IBA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0050733 RS domain binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr