ENSMUSG00000061613


Mus musculus

Features
Gene ID: ENSMUSG00000061613
  
Biological name :U2af1
  
Synonyms : Q9D883 / U2af1 / U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1
  
Possible biological names infered from orthology : P0DN76 / U2AF1L5 / U2 small nuclear RNA auxiliary factor 1 like 5
  
Species: Mus musculus
  
Chr. number: 17
Strand: -1
Band: B1
Gene start: 31647082
Gene end: 31658754
  
Corresponding Affymetrix probe sets: 10447515 (MoGene1.0st)   10449731 (MoGene1.0st)   1422509_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000014684
Ensembl peptide - ENSMUSP00000129864
NCBI entrez gene - 108121     See in Manteia.
MGI - MGI:98884
RefSeq - XM_006523473
RefSeq - NM_001163769
RefSeq - NM_024187
RefSeq - XM_006523472
RefSeq Peptide - NP_077149
RefSeq Peptide - NP_001157241
swissprot - Q14C24
swissprot - Q9D883
swissprot - G3UW94
Ensembl - ENSMUSG00000061613
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 u2af1ENSDARG00000015325Danio rerio
 U2AF1ENSGALG00000016198Gallus gallus
 P0DN76ENSG00000275895Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8BGJ9 / U2af1l4 / Splicing factor U2AF 26 kDa subunit / Q8WU68* / AD000671.2* / U2 small nuclear RNA auxiliary factor 1 like 4*ENSMUSG0000010937874
Q8BGJ9 / U2af1l4 / U2 small nuclear RNA auxiliary factor 1-like 4 / Q8WU68* / AD000671.2*ENSMUSG0000007876574
Zrsr2 / zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 / Q15696*ENSMUSG0000003137036
Zrsr1 / Q64707 / zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1ENSMUSG0000004406831


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000571  Zinc finger, CCCH-type
 IPR003954  RNA recognition motif domain, eukaryote
 IPR009145  U2 auxiliary factor small subunit
 IPR035979  RNA-binding domain superfamily
 IPR036855  Zinc finger, CCCH-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0089701 U2AF IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030628 pre-mRNA 3"-splice site binding IBA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0050733 RS domain binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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