ENSMUSG00000078765


Mus musculus

Features
Gene ID: ENSMUSG00000078765
  
Biological name :U2af1l4
  
Synonyms : Q8BGJ9 / U2af1l4 / U2 small nuclear RNA auxiliary factor 1-like 4
  
Possible biological names infered from orthology : AD000671.2 / Q8WU68
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: B1
Gene start: 30563301
Gene end: 30565365
  
Corresponding Affymetrix probe sets: 10551971 (MoGene1.0st)   10551981 (MoGene1.0st)   1434305_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000129102
Ensembl peptide - ENSMUSP00000146834
Ensembl peptide - ENSMUSP00000146831
Ensembl peptide - ENSMUSP00000146344
Ensembl peptide - ENSMUSP00000132915
Ensembl peptide - ENSMUSP00000132536
Ensembl peptide - ENSMUSP00000132316
Ensembl peptide - ENSMUSP00000131781
Ensembl peptide - ENSMUSP00000131654
Ensembl peptide - ENSMUSP00000131193
Ensembl peptide - ENSMUSP00000131048
Ensembl peptide - ENSMUSP00000130649
Ensembl peptide - ENSMUSP00000129697
Ensembl peptide - ENSMUSP00000129385
Ensembl peptide - ENSMUSP00000039406
Ensembl peptide - ENSMUSP00000125790
Ensembl peptide - ENSMUSP00000125838
Ensembl peptide - ENSMUSP00000125959
Ensembl peptide - ENSMUSP00000127233
Ensembl peptide - ENSMUSP00000128950
NCBI entrez gene - 233073     See in Manteia.
MGI - MGI:2678374
RefSeq - NM_170760
RefSeq Peptide - NP_739566
swissprot - E9Q5D0
swissprot - E9Q3S9
swissprot - E9Q1I7
swissprot - E9PWX6
swissprot - E9PWM2
swissprot - E9PWA1
swissprot - E9PUZ3
swissprot - A0A140LII6
swissprot - A0A140LII3
swissprot - A0A140LHB1
swissprot - F7A6Z4
swissprot - F7D8X7
swissprot - E9Q809
swissprot - Q8BGJ9
swissprot - E9Q5Y2
swissprot - E9Q5J3
Ensembl - ENSMUSG00000078765
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AD000671.2ENSG00000267120Homo sapiens
 Q8WU68ENSG00000161265Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8BGJ9 / U2af1l4 / Splicing factor U2AF 26 kDa subunit / Q8WU68* / AD000671.2* / U2 small nuclear RNA auxiliary factor 1 like 4*ENSMUSG00000109378100
U2af1 / Q9D883 / U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 / P0DN76* / U2AF1L5* / U2 small nuclear RNA auxiliary factor 1 like 5*ENSMUSG0000006161381
Zrsr2 / zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 / Q15696*ENSMUSG0000003137034
Zrsr1 / Q64707 / zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1ENSMUSG0000004406830


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000571  Zinc finger, CCCH-type
 IPR003954  RNA recognition motif domain, eukaryote
 IPR009145  U2 auxiliary factor small subunit
 IPR035979  RNA-binding domain superfamily
 IPR036855  Zinc finger, CCCH-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0048511 rhythmic process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0089701 U2AF IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030628 pre-mRNA 3"-splice site binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA Splicing - Major Pathway
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr