ENSMUSG00000109378


Mus musculus

Features
Gene ID: ENSMUSG00000109378
  
Biological name :U2af1l4
  
Synonyms : Q8BGJ9 / Splicing factor U2AF 26 kDa subunit / U2af1l4
  
Possible biological names infered from orthology : AD000671.2 / Q8WU68 / U2 small nuclear RNA auxiliary factor 1 like 4
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: B1
Gene start: 30563344
Gene end: 30567960
  
Corresponding Affymetrix probe sets: 10551971 (MoGene1.0st)   10551981 (MoGene1.0st)   10551989 (MoGene1.0st)   1426126_a_at (Mouse Genome 430 2.0 Array)   1434305_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000128886
Ensembl peptide - ENSMUSP00000130983
Ensembl peptide - ENSMUSP00000103796
MGI - MGI:6121629
MGI - MGI:2678374
swissprot - F8WH71
swissprot - Q8BGJ9
Ensembl - ENSMUSG00000109378
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 AD000671.2ENSG00000267120Homo sapiens
 Q8WU68ENSG00000161265Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8BGJ9 / U2af1l4 / U2 small nuclear RNA auxiliary factor 1-like 4 / Q8WU68* / AD000671.2*ENSMUSG00000078765100
U2af1 / Q9D883 / U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 / P0DN76* / U2AF1L5* / U2 small nuclear RNA auxiliary factor 1 like 5*ENSMUSG0000006161381
Zrsr2 / zinc finger (CCCH type), RNA binding motif and serine/arginine rich 2 / Q15696*ENSMUSG0000003137034
Zrsr1 / Q64707 / zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1ENSMUSG0000004406830


Protein motifs (from Interpro)
Interpro ID Name
No match


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0048511 rhythmic process IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0089701 U2AF IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0030628 pre-mRNA 3"-splice site binding IBA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0020476 abnormal circardian behavior entrainment "anomaly in the synchronization of a circadian behavior to environmental time cues such as light" [GO:0009649]
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Allelic Composition: Cdkn2atm2.1Rdp/Cdkn2atm2.1Rdp,Trp53tm1Brn/Trp53tm1Brn
Genetic Background: involves: 129P2/OlaHsd * 129S6/SvEvTac * C57BL/6 * FVB/N

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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