ENSG00000275895


Homo sapiens

Features
Gene ID: ENSG00000275895
  
Biological name :U2AF1L5
  
Synonyms : P0DN76 / U2AF1L5 / U2 small nuclear RNA auxiliary factor 1 like 5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 21
Strand: -1
Band: p12
Gene start: 6484623
Gene end: 6499261
  
Corresponding Affymetrix probe sets: 202858_at (Human Genome U133 Plus 2.0 Array)   231904_at (Human Genome U133 Plus 2.0 Array)   232141_at (Human Genome U133 Plus 2.0 Array)   234731_at (Human Genome U133 Plus 2.0 Array)   242499_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000482964
Ensembl peptide - ENSP00000490825
Ensembl peptide - ENSP00000480611
Ensembl peptide - ENSP00000492069
Ensembl peptide - ENSP00000485022
Ensembl peptide - ENSP00000485382
NCBI entrez gene - 102724594     See in Manteia.
RefSeq - XM_017028220
RefSeq - NM_001320646
RefSeq - NM_001320648
RefSeq - NM_001320650
RefSeq - NM_001320651
RefSeq - XM_017028219
RefSeq Peptide - NP_001307577
RefSeq Peptide - NP_001307579
RefSeq Peptide - NP_001307580
RefSeq Peptide - NP_001307575
swissprot - P0DN76
swissprot - A0A1B0GW87
Ensembl - ENSG00000275895
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 u2af1ENSDARG00000015325Danio rerio
 U2AF1ENSGALG00000016198Gallus gallus
 U2af1ENSMUSG00000061613Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
U2AF1 / Q01081 / U2 small nuclear RNA auxiliary factor 1ENSG00000160201100
Q8WU68 / U2AF1L4 / U2 small nuclear RNA auxiliary factor 1 like 4ENSG0000016126542
ZRSR2 / Q15696 / zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2ENSG0000016924934
AD000671.2ENSG0000026712023


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR000571  Zinc finger, CCCH-type
 IPR003954  RNA recognition motif domain, eukaryote
 IPR009145  U2 auxiliary factor small subunit
 IPR035979  RNA-binding domain superfamily
 IPR036855  Zinc finger, CCCH-type superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0089701 U2AF IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0050733 RS domain binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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