ENSGALG00000016461


Gallus gallus

Features
Gene ID: ENSGALG00000016461
  
Biological name :DDX1
  
Synonyms : ATP-dependent RNA helicase DDX1 / DDX1
  
Possible biological names infered from orthology : DEAD-box helicase 1 / Q91VR5 / Q92499
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 99391118
Gene end: 99412379
  
Corresponding Affymetrix probe sets: Gga.12163.1.S1_at (Chicken Array)   Gga.14606.1.S1_at (Chicken Array)   Gga.14606.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000026509
NCBI entrez gene - 395249     See in Manteia.
RefSeq - NM_204563
RefSeq Peptide - NP_989894
swissprot - F1NV49
Ensembl - ENSGALG00000016461
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx1ENSDARG00000032117Danio rerio
 DDX1ENSG00000079785Homo sapiens
 Ddx1ENSMUSG00000037149Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DDX3X / DDX3Y* / Q62167* / D1Pas1* / O00571* / O15523* / P16381* / Q62095* / DEAD-box helicase 3, X-linked* / DEAD-box helicase 3, Y-linked* / ATP-dependent RNA helicase DDX3Y * / ATP-depen...ENSGALG0000001623118
DDX41 / DEAD-box helicase 41 / Q91VN6* / Q9UJV9* / Probable ATP-dependent RNA helicase DDX41 *ENSGALG0000004299417
DDX4 / DEAD-box helicase 4 / Q61496* / Q9NQI0* / ATP-dependent RNA helicase DDX4 *ENSGALG0000001471316
DDX59 / DEAD-box helicase 59 / Q5T1V6* / Q9DBN9* / Probable ATP-dependent RNA helicase DDX59 *ENSGALG0000000216413


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR011545  DEAD/DEAH box helicase domain
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006302 double-strand break repair IEA
 biological_processGO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0009615 response to virus IEA
 biological_processGO:0032508 DNA duplex unwinding IEA
 biological_processGO:0043330 response to exogenous dsRNA IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:1903506 regulation of nucleic acid-templated transcription IEA
 biological_processGO:1903608 protein localization to cytoplasmic stress granule IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 cellular_componentGO:0071920 cleavage body IEA
 cellular_componentGO:0072669 tRNA-splicing ligase complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003682 chromatin binding IEA
 molecular_functionGO:0003712 transcription coregulator activity IEA
 molecular_functionGO:0003725 double-stranded RNA binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008026 ATP-dependent helicase activity IEA
 molecular_functionGO:0008143 poly(A) binding IEA
 molecular_functionGO:0033677 DNA/RNA helicase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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