ENSDARG00000032117


Danio rerio

Features
Gene ID: ENSDARG00000032117
  
Biological name :ddx1
  
Synonyms : ddx1 / DEAD (Asp-Glu-Ala-Asp) box helicase 1
  
Possible biological names infered from orthology : ATP-dependent RNA helicase DDX1 / DEAD-box helicase 1 / Q91VR5 / Q92499
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 33175190
Gene end: 33189652
  
Corresponding Affymetrix probe sets: Dr.19466.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000121049
Ensembl peptide - ENSDARP00000008636
NCBI entrez gene - 556790     See in Manteia.
RefSeq - NM_001197324
RefSeq Peptide - NP_001184253
swissprot - F1R3T3
swissprot - F1R2L8
ZFIN ID - ZDB-GENE-041001-215
Ensembl - ENSDARG00000032117
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX1ENSGALG00000016461Gallus gallus
 DDX1ENSG00000079785Homo sapiens
 Ddx1ENSMUSG00000037149Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ddx3b / DEAD (Asp-Glu-Ala-Asp) box helicase 3b / DDX3X* / DDX3Y* / O15523* / O00571* / P16381* / D1Pas1* / Q62167* / Q62095* / DEAD-box helicase 3, Y-linked* / DEAD-box helicase 3, X-linked...ENSDARG0000000577418
ddx3a / DEAD (Asp-Glu-Ala-Asp) box helicase 3a / DDX3X* / DDX3Y* / O15523* / O00571* / P16381* / D1Pas1* / Q62167* / Q62095* / DEAD-box helicase 3, Y-linked* / DEAD-box helicase 3, X-linked...ENSDARG0000002057318
ddx4 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 4 / Q61496* / Q9NQI0* / DEAD-box helicase 4* / ATP-dependent RNA helicase DDX4 *ENSDARG0000001437316
ddx59 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 / Q5T1V6* / Q9DBN9* / DEAD-box helicase 59* / Probable ATP-dependent RNA helicase DDX59 *ENSDARG0000002217714


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR001870  B30.2/SPRY domain
 IPR003877  SPRY domain
 IPR011545  DEAD/DEAH box helicase domain
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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