ENSGALG00000016986


Gallus gallus

Features
Gene ID: ENSGALG00000016986
  
Biological name :LCP1
  
Synonyms : LCP1 / plastin-2
  
Possible biological names infered from orthology : lymphocyte cytosolic protein 1 / P13796 / Q61233
  
Species: Gallus gallus
  
Chr. number: 1
Strand: -1
Band:
Gene start: 168016257
Gene end: 168044872
  
Corresponding Affymetrix probe sets: GgaAffx.10876.2.S1_s_at (Chicken Array)   GgaAffx.11727.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000063900
Ensembl peptide - ENSGALP00000027391
NCBI entrez gene - 418852     See in Manteia.
RefSeq - XM_015275555
RefSeq - NM_001008440
RefSeq - XM_015275546
RefSeq Peptide - NP_001008440
swissprot - F6RS71
swissprot - A0A1L1RYH3
Ensembl - ENSGALG00000016986
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lcp1ENSDARG00000023188Danio rerio
 LCP1ENSG00000136167Homo sapiens
 Lcp1ENSMUSG00000021998Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PLS3 / plastin-3 / P13797* / Q99K51* / Mus musculus plastin 3 (T-isoform) (Pls3), transcript variant 4, mRNA.*ENSGALG0000000593078
PLS1 / P19179 / Plastin-1 / Q14651* / Q3V0K9*ENSGALG0000000264771


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001715  Calponin homology domain
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002286 T cell activation involved in immune response IEA
 biological_processGO:0010737 protein kinase A signaling IEA
 biological_processGO:0016477 cell migration IEA
 biological_processGO:0022617 extracellular matrix disassembly IEA
 biological_processGO:0033157 regulation of intracellular protein transport IEA
 biological_processGO:0051017 actin filament bundle assembly IEA
 biological_processGO:0071803 positive regulation of podosome assembly IEA
 cellular_componentGO:0001725 stress fiber IEA
 cellular_componentGO:0001726 ruffle IEA
 cellular_componentGO:0001891 phagocytic cup IEA
 cellular_componentGO:0002102 podosome IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005884 actin filament IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005925 focal adhesion IEA
 cellular_componentGO:0015629 actin cytoskeleton IEA
 cellular_componentGO:0030175 filopodium IEA
 cellular_componentGO:0032432 actin filament bundle IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005178 integrin binding IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0042802 identical protein binding IEA
 molecular_functionGO:0051015 actin filament binding IEA
 molecular_functionGO:0051020 GTPase binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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