ENSDARG00000023188


Danio rerio

Features
Gene ID: ENSDARG00000023188
  
Biological name :lcp1
  
Synonyms : lcp1 / lymphocyte cytosolic protein 1 (L-plastin)
  
Possible biological names infered from orthology : lymphocyte cytosolic protein 1 / P13796 / Plastin-2 / Q61233
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 56251000
Gene end: 56272465
  
Corresponding Affymetrix probe sets: Dr.8109.1.S1_at (Zebrafish Array)   NM_131320_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000142380
NCBI entrez gene - 30583     See in Manteia.
RefSeq - NM_131320
RefSeq Peptide - NP_571395
swissprot - A0A140LGK1
swissprot - A0A140LGV0
ZFIN ID - ZDB-GENE-991213-5
Ensembl - ENSDARG00000023188
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LCP1ENSGALG00000016986Gallus gallus
 LCP1ENSG00000136167Homo sapiens
 Lcp1ENSMUSG00000021998Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pls3 / plastin 3 (T isoform) / Q99K51* / P13797* / plastin 3* / Mus musculus plastin 3 (T-isoform) (Pls3), transcript variant 4, mRNA.*ENSDARG0000003765578
pls1 / plastin 1 (I isoform) / Q14651* / Q3V0K9* / plastin 1*ENSDARG0000003927266


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001715  Calponin homology domain
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005509 calcium ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr