ENSDARG00000039272


Danio rerio

Features
Gene ID: ENSDARG00000039272
  
Biological name :pls1
  
Synonyms : plastin 1 (I isoform) / pls1
  
Possible biological names infered from orthology : plastin 1 / Q14651 / Q3V0K9
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 8059957
Gene end: 8111346
  
Corresponding Affymetrix probe sets: Dr.12067.1.A1_at (Zebrafish Array)   NM_199881_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000109993
Ensembl peptide - ENSDARP00000113948
NCBI entrez gene - 334273     See in Manteia.
RefSeq - NM_199881
RefSeq Peptide - NP_956175
swissprot - F1QCE2
swissprot - A5PM88
ZFIN ID - ZDB-GENE-030131-6205
Ensembl - ENSDARG00000039272
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PLS1ENSGALG00000002647Gallus gallus
 PLS1ENSG00000120756Homo sapiens
 Pls1ENSMUSG00000049493Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pls3 / plastin 3 (T isoform) / Q99K51* / P13797* / plastin 3* / Mus musculus plastin 3 (T-isoform) (Pls3), transcript variant 4, mRNA.*ENSDARG0000003765563
lcp1 / lymphocyte cytosolic protein 1 (L-plastin) / P13796* / lymphocyte cytosolic protein 1*ENSDARG0000002318862


Protein motifs (from Interpro)
Interpro ID Name
 IPR001589  Actinin-type actin-binding domain, conserved site
 IPR001715  Calponin homology domain
 IPR002048  EF-hand domain
 IPR011992  EF-hand domain pair
 IPR018247  EF-Hand 1, calcium-binding site
 IPR030235  Plastin-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0051017 actin filament bundle assembly IBA
 biological_processGO:0051639 actin filament network formation IBA
 biological_processGO:0051764 actin crosslink formation IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005884 actin filament IBA
 cellular_componentGO:0032432 actin filament bundle IBA
 molecular_functionGO:0003779 actin binding IEA
 molecular_functionGO:0005509 calcium ion binding IEA
 molecular_functionGO:0051015 actin filament binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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