ENSGALG00000043243


Gallus gallus

Features
Gene ID: ENSGALG00000043243
  
Biological name :CDK13
  
Synonyms : CDK13 / cyclin dependent kinase 13
  
Possible biological names infered from orthology : Q14004 / Q69ZA1
  
Species: Gallus gallus
  
Chr. number: 2
Strand: 1
Band:
Gene start: 50062031
Gene end: 50120197
  
Corresponding Affymetrix probe sets: Gga.19383.1.S1_at (Chicken Array)   GgaAffx.21077.1.S1_at (Chicken Array)   GgaAffx.23865.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045854
Ensembl peptide - ENSGALP00000056252
Ensembl peptide - ENSGALP00000050242
NCBI entrez gene - 420766     See in Manteia.
RefSeq - XM_418864
RefSeq - XM_015281630
RefSeq - XM_015281631
RefSeq - XM_015281632
RefSeq - XM_015281626
RefSeq - XM_015281627
RefSeq - XM_015281628
RefSeq - XM_015281629
swissprot - A0A1D5PTK4
swissprot - A0A1D5PBW0
swissprot - A0A1D5NZN6
Ensembl - ENSGALG00000043243
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdk13ENSDARG00000076791Danio rerio
 CDK13ENSG00000065883Homo sapiens
 Cdk13ENSMUSG00000041297Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDK12 / cyclin dependent kinase 12 / Q14AX6* / Q9NYV4*ENSGALG0000000173138
CDK9 / Q5ZKN1 / Cyclin-dependent kinase 9 / P50750* / Q99J95*ENSGALG000000355768


Protein motifs (from Interpro)
Interpro ID Name
 IPR000719  Protein kinase domain
 IPR008271  Serine/threonine-protein kinase, active site
 IPR011009  Protein kinase-like domain superfamily
 IPR017441  Protein kinase, ATP binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000380 alternative mRNA splicing, via spliceosome IEA
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0030097 hemopoiesis IEA
 biological_processGO:0070816 phosphorylation of RNA polymerase II C-terminal domain IEA
 biological_processGO:2000737 negative regulation of stem cell differentiation IEA
 cellular_componentGO:0002945 cyclin K-CDK13 complex IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004672 protein kinase activity IEA
 molecular_functionGO:0004674 protein serine/threonine kinase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008353 RNA polymerase II carboxy-terminal domain kinase activity IEA
 molecular_functionGO:0019901 protein kinase binding IEA
 molecular_functionGO:0030332 cyclin binding IEA


Pathways (from Reactome)
Pathway description
TP53 Regulates Transcription of DNA Repair Genes
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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