ENSG00000065883


Homo sapiens

Features
Gene ID: ENSG00000065883
  
Biological name :CDK13
  
Synonyms : CDK13 / cyclin dependent kinase 13 / Q14004
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: p14.1
Gene start: 39949646
Gene end: 40099580
  
Corresponding Affymetrix probe sets: 207318_s_at (Human Genome U133 Plus 2.0 Array)   207319_s_at (Human Genome U133 Plus 2.0 Array)   210965_x_at (Human Genome U133 Plus 2.0 Array)   213987_s_at (Human Genome U133 Plus 2.0 Array)   214287_s_at (Human Genome U133 Plus 2.0 Array)   228991_at (Human Genome U133 Plus 2.0 Array)   232266_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000495036
Ensembl peptide - ENSP00000495083
Ensembl peptide - ENSP00000496618
Ensembl peptide - ENSP00000496440
Ensembl peptide - ENSP00000496187
Ensembl peptide - ENSP00000181839
Ensembl peptide - ENSP00000340557
Ensembl peptide - ENSP00000480835
Ensembl peptide - ENSP00000484610
Ensembl peptide - ENSP00000493853
Ensembl peptide - ENSP00000494168
Ensembl peptide - ENSP00000494206
Ensembl peptide - ENSP00000494207
NCBI entrez gene - 8621     See in Manteia.
OMIM - 603309
RefSeq - NM_031267
RefSeq - XM_017012751
RefSeq - XM_017012750
RefSeq - NM_003718
RefSeq Peptide - NP_003709
RefSeq Peptide - NP_112557
swissprot - A0A024RA85
swissprot - Q14004
swissprot - Q9BVE2
swissprot - A0A024RA66
swissprot - A0A087X209
Ensembl - ENSG00000065883
  
Related genetic diseases (OMIM): 617360 - Congenital heart defects, dysmorphic facial features, and intellectual developmental disorder, 617360
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cdk13ENSDARG00000076791Danio rerio
 CDK13ENSGALG00000043243Gallus gallus
 Cdk13ENSMUSG00000041297Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CDK12 / Q9NYV4 / cyclin dependent kinase 12ENSG0000016725840
CDK9 / P50750 / cyclin dependent kinase 9ENSG000001368078


Protein motifs (from Interpro)
Interpro ID Name
 IPR000719  Protein kinase domain
 IPR008271  Serine/threonine-protein kinase, active site
 IPR011009  Protein kinase-like domain superfamily
 IPR017441  Protein kinase, ATP binding site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000380 alternative mRNA splicing, via spliceosome TAS
 biological_processGO:0006368 transcription elongation from RNA polymerase II promoter IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0006468 protein phosphorylation IEA
 biological_processGO:0007088 regulation of mitotic nuclear division TAS
 biological_processGO:0007275 multicellular organism development TAS
 biological_processGO:0008284 positive regulation of cell proliferation TAS
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0016032 viral process IEA
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0030097 hemopoiesis IMP
 biological_processGO:0043312 neutrophil degranulation TAS
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IBA
 biological_processGO:0051301 cell division IEA
 biological_processGO:0070816 phosphorylation of RNA polymerase II C-terminal domain IDA
 biological_processGO:2000737 negative regulation of stem cell differentiation IEA
 cellular_componentGO:0002945 cyclin K-CDK13 complex IPI
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space HDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005694 chromosome IBA
 cellular_componentGO:0005794 Golgi apparatus IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0008024 cyclin/CDK positive transcription elongation factor complex IBA
 cellular_componentGO:0016607 nuclear speck IEA
 cellular_componentGO:0019908 nuclear cyclin-dependent protein kinase holoenzyme complex ISS
 cellular_componentGO:1904813 ficolin-1-rich granule lumen TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0004672 protein kinase activity IEA
 molecular_functionGO:0004674 protein serine/threonine kinase activity IEA
 molecular_functionGO:0004693 cyclin-dependent protein serine/threonine kinase activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008134 transcription factor binding IBA
 molecular_functionGO:0008353 RNA polymerase II carboxy-terminal domain kinase activity IEA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0019901 protein kinase binding IEA
 molecular_functionGO:0030332 cyclin binding IPI
 molecular_functionGO:0044212 transcription regulatory region DNA binding IBA


Pathways (from Reactome)
Pathway description
TP53 Regulates Transcription of DNA Repair Genes
Neutrophil degranulation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000160 Microstomia "The presence of an abnormally small `mouth` (FMA:49184)." [HPO:curators]
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 HP:0000219 Thin upper lip 
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000322 Short philtrum 
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 HP:0000358 Posteriorly rotated ears "A type of `abnormal location of the ears` (HP:0000357) in which the position of the ears is characterized by posterior rotation (the superior part of the ears is rotated towards the back of the head, and the inferior part of the ears towards the front)." [HPO:probinson]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000750 Impaired language development 
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 HP:0001249 Mental retardation 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
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 HP:0002472 Small cerebral cortex 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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 HP:0012385 Camptodactyly "The distal interphalangeal joint and/or the proximal interphalangeal joint of the fingers or toes cannot be extended to 180 degrees by either active or passive extension." [HPO:probinson]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000090061 CCNK / O75909 / cyclin K  / reaction / complex






 

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