ENSMUSG00000000365


Mus musculus

Features
Gene ID: ENSMUSG00000000365
  
Biological name :Rnf17
  
Synonyms : Q99MV7 / RING finger protein 17 / Rnf17
  
Possible biological names infered from orthology : Q9BXT8
  
Species: Mus musculus
  
Chr. number: 14
Strand: 1
Band: C3
Gene start: 56402581
Gene end: 56525032
  
Corresponding Affymetrix probe sets: 10415472 (MoGene1.0st)   1425708_at (Mouse Genome 430 2.0 Array)   1425709_at (Mouse Genome 430 2.0 Array)   1438820_at (Mouse Genome 430 2.0 Array)   1459275_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000093469
Ensembl peptide - ENSMUSP00000153222
Ensembl peptide - ENSMUSP00000153573
NCBI entrez gene - 30054     See in Manteia.
MGI - MGI:1353419
RefSeq - XM_017316053
RefSeq - NM_001033043
RefSeq - XM_006519109
RefSeq - XM_006519110
RefSeq - XM_006519112
RefSeq - XM_006519108
RefSeq Peptide - NP_001028215
swissprot - Q99MV7
swissprot - A0A286YDU5
Ensembl - ENSMUSG00000000365
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnf17ENSDARG00000056387Danio rerio
 ENSGALG00000045414Gallus gallus
 RNF17ENSG00000132972Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Tdrd6 / tudor domain-containing protein 6 isoform 3 / O60522* / tudor domain containing 6*ENSMUSG0000004014015
Tdrd1 / Q99MV1 / Tudor domain-containing protein 1 / Q9BXT4* / tudor domain containing 1*ENSMUSG0000002508114
Tdrd5 / Q5VCS6 / Tudor domain-containing protein 5 / Q8NAT2* / tudor domain containing 5*ENSMUSG000000609858
Tdrkh / Q80VL1 / Mus musculus tudor and KH domain containing protein (Tdrkh), transcript variant 4, mRNA. / Q9Y2W6* / tudor and KH domain containing*ENSMUSG000000419124


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR002999  Tudor domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR035437  SNase-like, OB-fold superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007283 spermatogenesis IEA
 biological_processGO:0007286 spermatid development IMP
 biological_processGO:0030154 cell differentiation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0042803 protein homodimerization activity IPI
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001147 small testis "reduced size of the male reproductive glands" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:58959]
Show

Allelic Composition: Cd19tm1(cre)Cgn/Cd19+,Prdm1tm1Clme/Prdm1tm1Clme
Genetic Background: involves: 129P2/OlaHsd * 129S1/Sv * 129X1/SvJ

 MP:0001153 small seminiferous tubules "reduced diameter of the tubules in the testes where spermatogenesis occurs" [J:50844]
Show

Allelic Composition: Cd19tm1(cre)Cgn/Cd19+,Prdm1tm1Clme/Prdm1tm1Clme
Genetic Background: involves: 129P2/OlaHsd * 129S1/Sv * 129X1/SvJ

 MP:0001155 arrest of spermatogenesis "block of the process by which spermatogonial stem cells divide and differentiate into spermatozoa" [J:62271]
Show

Allelic Composition: Cd19tm1(cre)Cgn/Cd19+,Prdm1tm1Clme/Prdm1tm1Clme
Genetic Background: involves: 129P2/OlaHsd * 129S1/Sv * 129X1/SvJ

 MP:0001925 male infertility "inability of male to produce live offspring" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:60409]
Show

Allelic Composition: Cd19tm1(cre)Cgn/Cd19+,Prdm1tm1Clme/Prdm1tm1Clme
Genetic Background: involves: 129P2/OlaHsd * 129S1/Sv * 129X1/SvJ

 MP:0005159 azoospermia "absence of living spermatozoa " [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Cd19tm1(cre)Cgn/Cd19+,Prdm1tm1Clme/Prdm1tm1Clme
Genetic Background: involves: 129P2/OlaHsd * 129S1/Sv * 129X1/SvJ

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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