ENSDARG00000056387


Danio rerio

Features
Gene ID: ENSDARG00000056387
  
Biological name :rnf17
  
Synonyms : ring finger protein 17 / rnf17
  
Possible biological names infered from orthology : Q99MV7 / Q9BXT8
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 29548195
Gene end: 29571228
  
Corresponding Affymetrix probe sets: Dr.11408.1.A1_at (Zebrafish Array)   XM_692362_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000116232
Ensembl peptide - ENSDARP00000144505
NCBI entrez gene - 334519     See in Manteia.
RefSeq - XM_692362
RefSeq - XM_021478968
swissprot - F1R3C5
ZFIN ID - ZDB-GENE-030131-6451
Ensembl - ENSDARG00000056387
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000045414Gallus gallus
 RNF17ENSG00000132972Homo sapiens
 Rnf17ENSMUSG00000000365Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tdrd6 / tudor domain containing 6 / O60522* / tudor domain-containing protein 6 isoform 3 *ENSDARG0000007005214
si:dkeyp-93d12.1 / B5MCY1* / TDRD15* / tudor domain containing 15*ENSDARG0000001403913
tdrd1 / tudor domain containing 1 / Q99MV1* / Q9BXT4* / Tudor domain-containing protein 1 *ENSDARG0000000746511
si:ch211-189e2.3 / TDRD6* / O60522* / tudor domain containing 6* / tudor domain-containing protein 6 isoform 3 *ENSDARG000000899548
tdrd5 / Q1L981 / tudor domain containing 5 / Q8NAT2* / Q5VCS6* / Tudor domain-containing protein 5 *ENSDARG000000714505
tdrkh / tudor and KH domain containing / Q80VL1* / Q9Y2W6* / Mus musculus tudor and KH domain containing protein (Tdrkh), transcript variant 4, mRNA.*ENSDARG000000534744


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR002999  Tudor domain
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR017907  Zinc finger, RING-type, conserved site
 IPR018957  Zinc finger, C3HC4 RING-type
 IPR035437  SNase-like, OB-fold superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr