ENSDARG00000007465


Danio rerio

Features
Gene ID: ENSDARG00000007465
  
Biological name :tdrd1
  
Synonyms : tdrd1 / tudor domain containing 1
  
Possible biological names infered from orthology : Q99MV1 / Q9BXT4 / Tudor domain-containing protein 1
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 30344076
Gene end: 30359540
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000148308
Ensembl peptide - ENSDARP00000127225
Ensembl peptide - ENSDARP00000127267
Ensembl peptide - ENSDARP00000150322
NCBI entrez gene - 553522     See in Manteia.
RefSeq - NM_001164028
RefSeq Peptide - NP_001157500
swissprot - F1Q7S6
swissprot - U3JAF7
ZFIN ID - ZDB-GENE-070803-1
Ensembl - ENSDARG00000007465
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TDRD1ENSGALG00000046180Gallus gallus
 TDRD1ENSG00000095627Homo sapiens
 Tdrd1ENSMUSG00000025081Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tdrd6 / tudor domain containing 6 / O60522* / tudor domain-containing protein 6 isoform 3 *ENSDARG0000007005216
si:dkeyp-93d12.1 / B5MCY1* / TDRD15* / tudor domain containing 15*ENSDARG0000001403915
rnf17 / ring finger protein 17 / Q99MV7* / Q9BXT8*ENSDARG0000005638714
si:ch211-189e2.3 / TDRD6* / O60522* / tudor domain containing 6* / tudor domain-containing protein 6 isoform 3 *ENSDARG000000899548
tdrd5 / Q1L981 / tudor domain containing 5 / Q8NAT2* / Q5VCS6* / Tudor domain-containing protein 5 *ENSDARG000000714508
tdrkh / tudor and KH domain containing / Q80VL1* / Q9Y2W6* / Mus musculus tudor and KH domain containing protein (Tdrkh), transcript variant 4, mRNA.*ENSDARG000000534745


Protein motifs (from Interpro)
Interpro ID Name
 IPR002893  Zinc finger, MYND-type
 IPR002999  Tudor domain
 IPR035437  SNase-like, OB-fold superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0009016 germ line cell germ line cell decreased amount , abnormal
Show

 ZFA:0009288 primordial germ cell primordial germ cell P granule increased distance primordial germ cell mitochondrion, abnormal
primordial germ cell P granule physical object quality , abnormal
primordial germ cell P granule decreased amount , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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