ENSDARG00000053474


Danio rerio

Features
Gene ID: ENSDARG00000053474
  
Biological name :tdrkh
  
Synonyms : tdrkh / tudor and KH domain containing
  
Possible biological names infered from orthology : Mus musculus tudor and KH domain containing protein (Tdrkh), transcript variant 4, mRNA. / Q80VL1 / Q9Y2W6
  
Species: Danio rerio
  
Chr. number: 12
Strand: -1
Band:
Gene start: 33561418
Gene end: 33582382
  
Corresponding Affymetrix probe sets: Dr.12944.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000118670
Ensembl peptide - ENSDARP00000144762
Ensembl peptide - ENSDARP00000005097
Ensembl peptide - ENSDARP00000113528
NCBI entrez gene - 541541     See in Manteia.
RefSeq - NM_001014355
RefSeq Peptide - NP_001014377
swissprot - E9QJ41
swissprot - F1QM67
swissprot - F1R0M9
ZFIN ID - ZDB-GENE-050327-81
Ensembl - ENSDARG00000053474
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TDRKHENSGALG00000031812Gallus gallus
 TDRKHENSG00000182134Homo sapiens
 TdrkhENSMUSG00000041912Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tdrd5 / Q1L981 / tudor domain containing 5 / Q8NAT2* / Q5VCS6* / Tudor domain-containing protein 5 *ENSDARG0000007145015
tdrd6 / tudor domain containing 6 / O60522* / tudor domain-containing protein 6 isoform 3 *ENSDARG0000007005214
si:dkeyp-93d12.1 / B5MCY1* / TDRD15* / tudor domain containing 15*ENSDARG0000001403912
tdrd1 / tudor domain containing 1 / Q99MV1* / Q9BXT4* / Tudor domain-containing protein 1 *ENSDARG0000000746511
rnf17 / ring finger protein 17 / Q99MV7* / Q9BXT8*ENSDARG0000005638711
si:ch211-189e2.3 / TDRD6* / O60522* / tudor domain containing 6* / tudor domain-containing protein 6 isoform 3 *ENSDARG000000899546


Protein motifs (from Interpro)
Interpro ID Name
 IPR002999  Tudor domain
 IPR004087  K Homology domain
 IPR004088  K Homology domain, type 1
 IPR035437  SNase-like, OB-fold superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008150 biological_process ND
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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