ENSMUSG00000020232


Mus musculus

Features
Gene ID: ENSMUSG00000020232
  
Biological name :Hmg20b
  
Synonyms : high mobility group 20B / Hmg20b / Q9Z104
  
Possible biological names infered from orthology : Q9P0W2
  
Species: Mus musculus
  
Chr. number: 10
Strand: -1
Band: C1
Gene start: 81346048
Gene end: 81350480
  
Corresponding Affymetrix probe sets: 10371141 (MoGene1.0st)   1417637_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000137861
Ensembl peptide - ENSMUSP00000117322
Ensembl peptide - ENSMUSP00000128807
Ensembl peptide - ENSMUSP00000020454
Ensembl peptide - ENSMUSP00000100960
Ensembl peptide - ENSMUSP00000100961
Ensembl peptide - ENSMUSP00000115459
NCBI entrez gene - 15353     See in Manteia.
MGI - MGI:1341190
RefSeq - XM_006513249
RefSeq - NM_001163165
RefSeq - NM_001163166
RefSeq - NM_010440
RefSeq - XM_006513248
RefSeq Peptide - NP_001156637
RefSeq Peptide - NP_001156638
RefSeq Peptide - NP_034570
swissprot - Q05DT2
swissprot - F7AVN4
swissprot - Q3U1L0
swissprot - Q9Z104
swissprot - E9Q2W1
Ensembl - ENSMUSG00000020232
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 hmg20bENSDARG00000042045Danio rerio
 HMG20BENSGALG00000027838Gallus gallus
 HMG20BENSG00000064961Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Hmg20a / Q9DC33 / High mobility group protein 20A / Q9NP66* / high mobility group 20A*ENSMUSG0000003232948


Protein motifs (from Interpro)
Interpro ID Name
 IPR009071  High mobility group box domain
 IPR036910  High mobility group box domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization NAS
 biological_processGO:0006338 chromatin remodeling TAS
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated NAS
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0033234 negative regulation of protein sumoylation IDA
 biological_processGO:0035914 skeletal muscle cell differentiation IMP
 biological_processGO:0045666 positive regulation of neuron differentiation IGI
 cellular_componentGO:0000794 condensed nuclear chromosome ISO
 cellular_componentGO:0002111 BRCA2-BRAF35 complex ISO
 cellular_componentGO:0005634 nucleus NAS
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0016604 nuclear body ISO
 molecular_functionGO:0000400 four-way junction DNA binding ISO
 molecular_functionGO:0003677 DNA binding TAS
 molecular_functionGO:0003700 DNA-binding transcription factor activity NAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0046982 protein heterodimerization activity IPI


Pathways (from Reactome)
Pathway description
HDACs deacetylate histones
Factors involved in megakaryocyte development and platelet production


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr