ENSMUSG00000020388


Mus musculus

Features
Gene ID: ENSMUSG00000020388
  
Biological name :Pdlim4
  
Synonyms : P70271 / Pdlim4 / PDZ and LIM domain protein 4
  
Possible biological names infered from orthology : P50479 / PDZ and LIM domain 4
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: B1.3
Gene start: 54054928
Gene end: 54069014
  
Corresponding Affymetrix probe sets: 10385903 (MoGene1.0st)   1417928_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000121248
Ensembl peptide - ENSMUSP00000018755
Ensembl peptide - ENSMUSP00000090797
NCBI entrez gene - 30794     See in Manteia.
MGI - MGI:1353470
RefSeq - NM_019417
RefSeq - XM_006533511
RefSeq Peptide - NP_062290
swissprot - A8Y5C3
swissprot - P70271
swissprot - Q5SWV3
Ensembl - ENSMUSG00000020388
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pdlim4ENSDARG00000068973Danio rerio
 PDLIM4ENSGALG00000039872Gallus gallus
 P50479ENSG00000131435Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O70400 / Pdlim1 / PDZ and LIM domain protein 1 / O00151* / PDZ and LIM domain 1*ENSMUSG0000005504444
O70209 / Pdlim3 / PDZ and LIM domain protein 3 / Q53GG5* / PDZ and LIM domain 3*ENSMUSG0000003163641
Pdlim2 / Q8R1G6 / PDZ and LIM domain protein 2 / Q96JY6* / PDZ and LIM domain 2*ENSMUSG0000002209032


Protein motifs (from Interpro)
Interpro ID Name
 IPR001478  PDZ domain
 IPR001781  Zinc finger, LIM-type
 IPR031847  Domain of unknown function DUF4749
 IPR036034  PDZ superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031532 actin cytoskeleton reorganization IEA
 biological_processGO:0098976 excitatory chemical synaptic transmission ISS
 cellular_componentGO:0001725 stress fiber IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005856 cytoskeleton ISO
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030027 lamellipodium IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0031901 early endosome membrane IEA
 cellular_componentGO:0031905 early endosome lumen ISS
 cellular_componentGO:0031941 filamentous actin IEA
 cellular_componentGO:0034777 recycling endosome lumen ISS
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0043197 dendritic spine ISS
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane ISS
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 cellular_componentGO:0055038 recycling endosome membrane IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0019903 protein phosphatase binding IEA
 molecular_functionGO:0042803 protein homodimerization activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051393 alpha-actinin binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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