ENSMUSG00000027184


Mus musculus

Features
Gene ID: ENSMUSG00000027184
  
Biological name :Caprin1
  
Synonyms : Caprin1 / Q60865
  
Possible biological names infered from orthology : cell cycle associated protein 1 / Q14444
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: E2
Gene start: 103762941
Gene end: 103797649
  
Corresponding Affymetrix probe sets: 10485514 (MoGene1.0st)   1416461_at (Mouse Genome 430 2.0 Array)   1416462_at (Mouse Genome 430 2.0 Array)   1416463_at (Mouse Genome 430 2.0 Array)   1433901_at (Mouse Genome 430 2.0 Array)   1448347_a_at (Mouse Genome 430 2.0 Array)   1448348_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000106777
Ensembl peptide - ENSMUSP00000117733
Ensembl peptide - ENSMUSP00000119327
Ensembl peptide - ENSMUSP00000028607
Ensembl peptide - ENSMUSP00000114423
NCBI entrez gene - 53872     See in Manteia.
MGI - MGI:1858234
RefSeq - XM_006499902
RefSeq - NM_001111289
RefSeq - NM_001111290
RefSeq - NM_001111291
RefSeq - NM_001111292
RefSeq - NM_016739
RefSeq Peptide - NP_001104760
RefSeq Peptide - NP_001104761
RefSeq Peptide - NP_001104762
RefSeq Peptide - NP_058019
RefSeq Peptide - NP_001104759
swissprot - F6YP03
swissprot - A2BH47
swissprot - Q60865
swissprot - F6YLI0
Ensembl - ENSMUSG00000027184
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 caprin1aENSDARG00000009346Danio rerio
 caprin1bENSDARG00000054272Danio rerio
 CAPRIN1ENSGALG00000013532Gallus gallus
 Q14444ENSG00000135387Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q05A80 / Caprin2 / Q6IMN6* / caprin family member 2*ENSMUSG0000003030936
C1ql1 / O88992 / C1q-related factor / O75973* / complement C1q like 1*ENSMUSG000000455325
Q9ES30 / C1qtnf3 / Complement C1q tumor necrosis factor-related protein 3 / Q9BXJ4* / C1QTNF3-AMACR* / C1q and TNF related 3* / C1QTNF3-AMACR readthrough (NMD candidate)*ENSMUSG000000589145
C1ql2 / Q8CFR0 / Complement C1q-like protein 2 / Q7Z5L3* / complement C1q like 2*ENSMUSG000000369075
C1ql3 / Q9ESN4 / Complement C1q-like protein 3 / Q5VWW1* / complement C1q like 3*ENSMUSG000000496305
Cbln2 / Q8BGU2 / Cerebellin-2 / Q8IUK8* / cerebellin 2 precursor*ENSMUSG000000246474
C1ql4 / Q4ZJM9 / Complement C1q-like protein 4 / Q86Z23* / complement C1q like 4*ENSMUSG000000010764
Cbln1 / Q9R171 / Cerebellin-1 Cerebellin [des-Ser1]-cerebellin / P23435* / cerebellin 1 precursor*ENSMUSG000000316543
Cbln3 / Q9JHG0 / Cerebellin-3 / Q6UW01* / cerebellin 3 precursor*ENSMUSG000000403802
Cbln4 / Q8BME9 / Cerebellin-4 / Q9NTU7* / cerebellin 4 precursor*ENSMUSG000000675782


Protein motifs (from Interpro)
Interpro ID Name
 IPR022070  Cytoplasmic activation/proliferation-associated protein-1 C term
 IPR028816  Caprin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0017148 negative regulation of translation ISS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0050775 positive regulation of dendrite morphogenesis IMP
 biological_processGO:0061003 positive regulation of dendritic spine morphogenesis IMP
 cellular_componentGO:0000932 P-body ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0010494 cytoplasmic stress granule ISS
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0042995 cell projection IEA
 molecular_functionGO:0003723 RNA binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0001504 abnormal posture "atypical position of the limbs or carriage of the body" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:18984]
Show

Allelic Composition: Nox4tm1.1Ams/Nox4tm1.1Ams
Genetic Background: B6.129-Nox4tm1.1Ams

 MP:0001575 cyanosis "a dark bluish or purple skin discoloration resulting from deficient oxygenation of the blood" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:60159]
Show

Allelic Composition: Nox4tm1.1Ams/Nox4tm1.1Ams
Genetic Background: B6.129-Nox4tm1.1Ams

 MP:0001953 respiratory failure "cessation of or failure to commence breathing" [MGI:cls, J:60159]
Show

Allelic Composition: Nox4tm1.1Ams/Nox4tm1.1Ams
Genetic Background: B6.129-Nox4tm1.1Ams

 MP:0003203 increased neuron apoptosis "increase in the number of neurons undergoing programmed cell death" [RGD:Rat Genome Database submission]
Show

Allelic Composition: Nox4tm1.1Ams/Nox4tm1.1Ams
Genetic Background: B6.129-Nox4tm1.1Ams

 MP:0004200 reduced fetal size "smaller proportions of a fetus compared to littermates (sensu Mus: from E14 through birth)" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Nox4tm1.1Ams/Nox4tm1.1Ams
Genetic Background: B6.129-Nox4tm1.1Ams

 MP:0004753 abnormal miniature excitatory postsynaptic currents "defect in the size or duration of spontaneous currents detected in postsynaptic cells that occur in the absence of an excitatory impulse" [MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Nox4tm1.1Ams/Nox4tm1.1Ams
Genetic Background: B6.129-Nox4tm1.1Ams

 MP:0004811 abnormal neuron physiology "anomalous function of the cells of the nervous system that receive, conduct, and transmit impulses" [MESH:National Library of Medicine_Medical Subject Headings]
Show

Allelic Composition: Nox4tm1.1Ams/Nox4tm1.1Ams
Genetic Background: B6.129-Nox4tm1.1Ams

 MP:0008143 abnormal dendrite morphology "any structural anomaly of the highly branched tree-like process of a neuron that serves as a receptive field and conducts impulses toward the cell body" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator", MGI:rbabiuk "Randall Babiuk, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Nox4tm1.1Ams/Nox4tm1.1Ams
Genetic Background: B6.129-Nox4tm1.1Ams

 MP:0009538 abnormal synapse morphology "any strucutral anomaly of the membrane junction site of a nerve cell to a target cell, such as another nerve cell, an effector cell, or a sensory receptor cell; transmission of nerve impulses may be mediated by chemical or by electrical means" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition", MESH:A08.850]
Show

Allelic Composition: Nox4tm1.1Ams/Nox4tm1.1Ams
Genetic Background: B6.129-Nox4tm1.1Ams

 MP:0011087 complete neonatal lethality "death of all organisms of a given genotype in a population within the neonatal period after birth (Mus: P0)" [MGI:csmith]
Show

Allelic Composition: Nox4tm1.1Ams/Nox4tm1.1Ams
Genetic Background: B6.129-Nox4tm1.1Ams

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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