ENSMUSG00000028137


Mus musculus

Features
Gene ID: ENSMUSG00000028137
  
Biological name :Celf3
  
Synonyms : Celf3 / Mus musculus CUGBP, Elav-like family member 3 (Celf3), transcript variant 8, mRNA. / Q8CIN6
  
Possible biological names infered from orthology : CUGBP Elav-like family member 3 / Q5SZQ8
  
Species: Mus musculus
  
Chr. number: 3
Strand: 1
Band: F2.1
Gene start: 94478295
Gene end: 94492198
  
Corresponding Affymetrix probe sets: 10494069 (MoGene1.0st)   1452851_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000142542
Ensembl peptide - ENSMUSP00000142412
Ensembl peptide - ENSMUSP00000142967
Ensembl peptide - ENSMUSP00000143733
Ensembl peptide - ENSMUSP00000143532
Ensembl peptide - ENSMUSP00000143344
Ensembl peptide - ENSMUSP00000143089
Ensembl peptide - ENSMUSP00000029784
NCBI entrez gene - 78784     See in Manteia.
MGI - MGI:1926034
RefSeq - XM_017319810
RefSeq - XM_006502325
RefSeq - XM_006502327
RefSeq - XM_006502328
RefSeq - XM_006502329
RefSeq - XM_006502330
RefSeq - XM_006502331
RefSeq - XM_006502332
RefSeq - XM_006502334
RefSeq - XM_006502335
RefSeq - XM_006502336
RefSeq - XM_006502338
RefSeq - XM_011240284
RefSeq - NM_001289613
RefSeq - NM_001289616
RefSeq - NM_001289620
RefSeq - NM_001357786
RefSeq - NM_172434
RefSeq - XM_006502323
RefSeq - XM_006502324
RefSeq Peptide - NP_001276545
RefSeq Peptide - NP_001276549
RefSeq Peptide - NP_001344715
RefSeq Peptide - NP_766022
RefSeq Peptide - NP_001276542
swissprot - Q8CIN6
swissprot - A0A0G2JDL2
swissprot - A0A0G2JGX2
swissprot - A0A0G2JGE2
swissprot - A0A0G2JFA4
swissprot - A0A0G2JF00
swissprot - A0A0G2JDX3
Ensembl - ENSMUSG00000028137
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 celf3aENSDARG00000034668Danio rerio
 celf3bENSDARG00000006983Danio rerio
 ENSGALG00000028478Gallus gallus
 CELF3ENSG00000159409Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Celf4 / Q7TSY6 / CUGBP Elav-like family member 4 / Q9BZC1*ENSMUSG0000002426867
Celf6 / Q7TN33 / CUGBP Elav-like family member 6 / Q96J87* / AC009690.3*ENSMUSG0000003229761
Celf5 / CUGBP, Elav-like family member 5 / Q8N6W0*ENSMUSG0000003481849
Celf2 / Q9Z0H4 / CUGBP Elav-like family member 2 / O95319*ENSMUSG0000000210745
Celf1 / P28659 / CUGBP Elav-like family member 1 / Q92879*ENSMUSG0000000550644


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034648  CELF-3/4/5/6, RNA recognition motif 1
 IPR035979  RNA-binding domain superfamily
 IPR036638  Helix-loop-helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome ISO
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007283 spermatogenesis IMP
 biological_processGO:0008380 RNA splicing ISO
 biological_processGO:0030317 flagellated sperm motility IMP
 biological_processGO:0030575 nuclear body organization IMP
 biological_processGO:0048026 positive regulation of mRNA splicing, via spliceosome ISS
 biological_processGO:0098781 ncRNA transcription IMP
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0016604 nuclear body IDA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0097322 7SK snRNA binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002674 abnormal sperm motility "anomalies in the mobility of the spermatozoa" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
Show

Allelic Composition: Pax6Sey/Pax6Sey-H
Genetic Background: involves: 101/H * C3H/HeH * C57BL/10

 MP:0002687 oligozoospermia "reduced concentration of spermatozoa " [pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator, J:57312]
Show

Allelic Composition: Pax6Sey/Pax6Sey-H
Genetic Background: involves: 101/H * C3H/HeH * C57BL/10

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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