ENSMUSG00000032297


Mus musculus

Features
Gene ID: ENSMUSG00000032297
  
Biological name :Celf6
  
Synonyms : Celf6 / CUGBP Elav-like family member 6 / Q7TN33
  
Possible biological names infered from orthology : AC009690.3 / Q96J87
  
Species: Mus musculus
  
Chr. number: 9
Strand: 1
Band: B
Gene start: 59577917
Gene end: 59607292
  
Corresponding Affymetrix probe sets: 10585889 (MoGene1.0st)   1429790_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000112755
Ensembl peptide - ENSMUSP00000112403
Ensembl peptide - ENSMUSP00000113196
Ensembl peptide - ENSMUSP00000122167
Ensembl peptide - ENSMUSP00000118556
Ensembl peptide - ENSMUSP00000034840
NCBI entrez gene - 76183     See in Manteia.
MGI - MGI:1923433
RefSeq - XM_017313681
RefSeq - XM_006511541
RefSeq - XM_006511542
RefSeq - XM_006511543
RefSeq - XM_006511544
RefSeq - XM_006511545
RefSeq - XM_006511546
RefSeq - XM_011242834
RefSeq - NM_001311092
RefSeq - NM_175235
RefSeq - XM_006511540
RefSeq Peptide - NP_001298021
RefSeq Peptide - NP_780444
swissprot - D3YX51
swissprot - D6RHP1
swissprot - D3YU11
swissprot - Q7TN33
swissprot - D6RGB9
Ensembl - ENSMUSG00000032297
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CELF6ENSDARG00000101933Danio rerio
 ENSGALG00000031313Gallus gallus
 AC009690.3ENSG00000273025Homo sapiens
 CELF6ENSG00000140488Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Celf4 / Q7TSY6 / CUGBP Elav-like family member 4 / Q9BZC1*ENSMUSG0000002426871
Celf3 / Q8CIN6 / Mus musculus CUGBP, Elav-like family member 3 (Celf3), transcript variant 8, mRNA. / Q5SZQ8* / CUGBP Elav-like family member 3*ENSMUSG0000002813765
Celf5 / CUGBP, Elav-like family member 5 / Q8N6W0*ENSMUSG0000003481849
Celf1 / P28659 / CUGBP Elav-like family member 1 / Q92879*ENSMUSG0000000550647
Celf2 / Q9Z0H4 / CUGBP Elav-like family member 2 / O95319*ENSMUSG0000000210747


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034648  CELF-3/4/5/6, RNA recognition motif 1
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001505 regulation of neurotransmitter levels IMP
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0071625 vocalization behavior IMP
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Col4a4bwk/Col4a4bwk
Genetic Background: 129S1.NON(NZO)-Col4a4bwk/PgnJ

 MP:0002204 abnormal neurotransmitter physiology "aberrant function or production of endogenous signaling molecules secreted by neurons that alter the behavior of neurons or effector cells" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Mapk8tm1.1Jcbr/Mapk8tm1.1Jcbr
Genetic Background: involves: 129S4/SvJae * C57BL/6

 MP:0002572 abnormal emotion/affect behavior "altered response in tests for emotional related behaviors" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Mapk8tm1.1Jcbr/Mapk8tm1.1Jcbr
Genetic Background: involves: 129S4/SvJae * C57BL/6

 MP:0003462 abnormal response to novel odor "altered investigative behavior from controls in reactions associated with exposing an animal to a novel odor" [CFG:Center for Functional Genomics, Northwestern University]
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Allelic Composition: Mapk8tm1.1Jcbr/Mapk8tm1.1Jcbr
Genetic Background: involves: 129S4/SvJae * C57BL/6

 MP:0003731 abnormal outer nuclear layer morphology "malformation/anomalous structure of the retinal layer that contains the nuclei and cell bodies of rods and cones" [monikat:Monika Tomczuk, Mouse Genome Informatics Curator]
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Allelic Composition: Cbx2tm1b(KOMP)Wtsi/Cbx2+
Genetic Background: C57BL/6N-Cbx2tm1b(KOMP)Wtsi/H

 MP:0010070 decreased serotonin concentration "reduction in the amount per unit of biochemical messenger and regulator, found in the CNS, gastrointestinal tract, and produced by platelets that mediates neurotransmission, gastrointestinal motility, hemostasis, and cardiovascular integrity" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition"]
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Allelic Composition: Mapk8tm1.1Jcbr/Mapk8tm1.1Jcbr
Genetic Background: involves: 129S4/SvJae * C57BL/6

 MP:0020351 decreased vocalization "decrease in the production of vocal sound" [ORCID: orcid.org/0000-0003-4606-0597, PMID:26621702]
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Allelic Composition: Mapk8tm1.1Jcbr/Mapk8tm1.1Jcbr
Genetic Background: involves: 129S4/SvJae * C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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