ENSMUSG00000029426


Mus musculus

Features
Gene ID: ENSMUSG00000029426
  
Biological name :Scarb2
  
Synonyms : Lysosome membrane protein 2 / O35114 / Scarb2
  
Possible biological names infered from orthology : Q14108 / scavenger receptor class B member 2
  
Species: Mus musculus
  
Chr. number: 5
Strand: -1
Band: E2
Gene start: 92441314
Gene end: 92506833
  
Corresponding Affymetrix probe sets: 10531437 (MoGene1.0st)   1454704_at (Mouse Genome 430 2.0 Array)   1460235_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000031377
NCBI entrez gene - 12492     See in Manteia.
MGI - MGI:1196458
RefSeq - NM_007644
RefSeq Peptide - NP_031670
swissprot - O35114
Ensembl - ENSMUSG00000029426
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scarb2cENSDARG00000089844Danio rerio
 SCARB2ENSGALG00000011499Gallus gallus
 Q14108ENSG00000138760Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q61009 / Scarb1 / Scavenger receptor class B member 1 / Q8WTV0*ENSMUSG0000003793631
Cd36 / Q08857 / Platelet glycoprotein 4 / P16671* / CD36 molecule*ENSMUSG0000000294430


Protein motifs (from Interpro)
Interpro ID Name
 IPR002159  CD36 family
 IPR005429  Lysosome membrane protein II


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001508 action potential IMP
 biological_processGO:0006622 protein targeting to lysosome IMP
 biological_processGO:0010976 positive regulation of neuron projection development IEA
 biological_processGO:1905123 regulation of glucosylceramidase activity IMP
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane IDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0043202 lysosomal lumen IDA
 molecular_functionGO:0019899 enzyme binding IEA


Pathways (from Reactome)
Pathway description
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000048 abnormal stria vascularis "anomalous structure of the layer of highly vascularized pigmented granular cells on the outer wall of the cochlear duct" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0000519 hydronephrosis "dilation of the pelvis and calices of one or both kidneys" [J:56641]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0000534 abnormal ureter morphology "anomalous structure of the tube that conducts the urine from the renal pelvis to the bladder" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0000745 tremors "repetitive, cyclical movements of the body or a body part; usually involuntary, but can also manifest in response to an attempt at movement" [MeSH:National Library of Medicine - Medical Subject Headings , 2003, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Scarb2tm1Psa/Scarb2tm1Psa
Genetic Background: involves: 129P2/OlaHsd * C57BL/6N

 MP:0000753 paralysis "loss of power of voluntary movement in a muscle through injury or disease of its nerve supply" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Scarb2tm1Psa/Scarb2tm1Psa
Genetic Background: involves: 129P2/OlaHsd * C57BL/6N

 MP:0000921 demyelination "loss of the myelin sheath without loss of axons or fiber tracts" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0001078 abnormal phrenic nerve "malformed or misprojection of motor and sensory neuron axons to the diaphragm and other tissues" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, MGI:CLS, J:60159]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0001106 abnormal Schwann cell "malformed or absent cells which form the insulating myelin sheaths of peripheral axons" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0001262 decreased body weight "lower than normal average weight " [J:61295]
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Allelic Composition: Scarb2tm1Psa/Scarb2tm1Psa
Genetic Background: involves: 129P2/OlaHsd * C57BL/6N

 MP:0001270 distended abdomen "abdomen appears curved outward or swollen; can be due to skeletal axial defects, enlarged visceral organs or megacolon" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0001426 polydipsia "excessive thirst that is relatively prolonged" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0001513 limb grasping "mice clasp front and/or hind feet almost immediately upon being lifted by tail" [cml:Cathleen M. Lutz , Mouse Genome Informatics Curator]
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Allelic Composition: Scarb2tm1Psa/Scarb2tm1Psa
Genetic Background: involves: 129P2/OlaHsd * C57BL/6N

 MP:0001762 polyuria "increased volume of urine produced and excreted" [cwg:Carroll-Ann W. Goldsmith , Mouse Genome Informatics curator, smb:Susan M Bello, Mouse Genome Informatics Curator]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0001967 deafness "inability to hear" [J:57651]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0002083 premature death "death after 3 weeks of age, but before normal life span" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

Allelic Composition: Scarb2tm1Psa/Scarb2tm1Psa
Genetic Background: involves: 129P2/OlaHsd * C57BL/6N

 MP:0002229 CNS neurodegeneration "a retrogressive impairment of function or destruction of neural tissue" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8, csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Scarb2tm1Psa/Scarb2tm1Psa
Genetic Background: involves: 129P2/OlaHsd * C57BL/6N

 MP:0002857 cochlear ganglion degeneration "loss of neural cell bodies in the group of nerve cell bodies that conveys auditory sensation from the organ of Corti to the hindbrain" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0002871 albuminuria "presence of excess albumin in the urine" [RGD:Rat Genome Database submission, Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0002882 abnormal neuron "anomaly in the functional cells of the nervous system that receive, conduct, and transmit impulses " [MeSH:National Library of Medicine - Medical Subject Headings, 2003]
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Allelic Composition: Scarb2tm1Psa/Scarb2tm1Psa
Genetic Background: involves: 129P2/OlaHsd * C57BL/6N

 MP:0002895 abnormal otolithic membrane "malformations of the gelatinous membrane surmounting the acoustic maculae of the saccule and utricle and containing minute calciferous particles (otoliths)" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0002978 absent otoliths "absence of the crystalline calciferous particles adhering to the otolithic membrane" [Stedman s Medical Dictionary , 27th edition:ISBN 0-683-40008-8]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0002988 decreased urine osmolarity "reduction in the concentration of ions in the urine compared to normal" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, J:83000]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0003354 astrocytosis "a proliferation or spread of astrocytes in the area of a degenerative lesion or damaged tissue" [MeSH:National Library of Medicine - Medical Subject Headings , 2003]
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Allelic Composition: Scarb2tm1Psa/Scarb2tm1Psa
Genetic Background: involves: 129P2/OlaHsd * C57BL/6N

 MP:0003630 abnormal urothelium "malformation of the mucus lining in organs of the urinary tract, consisting in the bladder of three to seven cell layers" [smb:Susan M Bello, Mouse Genome Informatics Curator, J:95622]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0003632 abnormal nervous system morphology 
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

Allelic Composition: Scarb2tm1Psa/Scarb2tm1Psa
Genetic Background: involves: 129P2/OlaHsd * C57BL/6N

 MP:0003870 decreased urine glucose level "a greater level of excretion of glucose in the urine compared to the normal state" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator, RGD:Rat Genome Database submission]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0004363 stria vascularis degeneration "degeneration or loss of the stratified, secretory epithelium which lines the upper part of the cochlear spiral ligament and maintains potassium ion homeostasis in the endolymph" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0004366 abnormal strial marginal cells "any structural abnormality in the polarized columnar cells of epithelial origin which cover the lateral surface of the cochlear duct, secrete potassium ions and form a continuous sheet in contact with the endolymph; marginal cells form extensive interdigitations with the basal and intermediate cells in the normal adult stria" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0004368 abnormal stria vascularis vasculature "any structural anomaly of the blood vessels supplying the stria vascularis in the cochlea of the inner ear" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0004398 cochlear inner hair cell degeneration "degeneration or loss of the single row of flask-shaped inner hair sensory cells of the organ of Corti" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0004404 cochlear outer hair cell degeneration "degeneration or loss of the columnar outer hair sensory cells of the organ of Corti" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0004410 absent endocochlear potential "absence of the electrical potential difference between the endolymphatic and perilymphatic compartments of the cochlea, indicating a primary defect in fluid homeostasis of the inner ear" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0004411 decreased endocochlear potential "reduction of the electrical potential difference between the endolymphatic and perilymphatic compartments of the cochlea" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0004438 abnormal vestibular hair cell physiology "anomalies in processes pertinent to the integrated function of the sensory epithelium of the maculae and cristae in the membranous labyrinth of the inner ear" [J:100987, MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0004736 abnormal distortion product otoacoustic emission "any abnormality in the sound produced by the cochlea in response to stimulation with 2 simultaneous tones of different frequencies; this measurement is particularly useful in assessing the functional state of OHCs" [eMedicine:http://www.emedicine.com/ent/topic372.htm, MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0004738 abnormal brainstem auditory evoked potential "anomaly in the electrical activity generated in response to short tone bursts; may be used to evaluate sensorineural hearing function" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0004740 sensorineural hearing loss "a form of progressive hearing loss due to a lesion of the auditory division of cranial nerve VIII or the inner ear" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator"]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0004924 abnormal behavior "anomalies in the actions, reactions, or performance of an organism in response to external or internal stimuli compared to controls" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Scarb2tm1Psa/Scarb2tm1Psa
Genetic Background: involves: 129P2/OlaHsd * C57BL/6N

 MP:0005584 abnormal enzyme/coenzyme activity "altered ability of any of these proteins, or their cofactors, to act as catalysts to induce chemical changes in other substances" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
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Allelic Composition: Scarb2tm1Psa/Scarb2tm1Psa
Genetic Background: involves: 129P2/OlaHsd * C57BL/6N

 MP:0006359 absent startle reflex "failure to respond to variable stimuli, often auditory; usually measured by amplitude of whole body flinch" [MGI:anna "Anna V. Anagnostopoulos, Mouse Genome Informatics Curator", MGI:smb "Susan M. Bello, Mouse Genome Informatics Curator"]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0008918 microgliosis "a proliferation or spread of microglia in the area of a degenerative lesion or damaged tissue" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
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Allelic Composition: Scarb2tm1Psa/Scarb2tm1Psa
Genetic Background: involves: 129P2/OlaHsd * C57BL/6N

 MP:0011305 dilated kidney calyx "an expansion in the lumen volume or area of any of the branches of the renal pelvis that surround each renal papilla and collect urine" [MGI:anna]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0011418 leukocyturia "presence of white blood cells in the urine" [MGI:anna]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0011426 abnormal ureter smooth muscle morphology "any structural anomaly of the smooth muscle tissue surrounding the epithelium of the ureter" [MGI:anna]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0011487 abnormal ureteropelvic junction morphology "any structural anomaly of the junction between the ureter and the renal pelvis of the kidney" [MGI:anna, MGI:csmith]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

 MP:0011491 ureteropelvic junction obstruction "a partial or total blockage of the flow of urine through the junction of the renal pelvis and the proximal ureter" [MGI:anna]
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Allelic Composition: Mybpc3tm1.1Jse/Mybpc3tm1.1Jse
Genetic Background: Not Specified

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
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