ENSG00000138760


Homo sapiens

Features
Gene ID: ENSG00000138760
  
Biological name :SCARB2
  
Synonyms : Q14108 / SCARB2 / scavenger receptor class B member 2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: q21.1
Gene start: 76158733
Gene end: 76234536
  
Corresponding Affymetrix probe sets: 201646_at (Human Genome U133 Plus 2.0 Array)   201647_s_at (Human Genome U133 Plus 2.0 Array)   215754_at (Human Genome U133 Plus 2.0 Array)   224983_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000399154
Ensembl peptide - ENSP00000264896
Ensembl peptide - ENSP00000492840
Ensembl peptide - ENSP00000492831
Ensembl peptide - ENSP00000492737
Ensembl peptide - ENSP00000492714
Ensembl peptide - ENSP00000492288
Ensembl peptide - ENSP00000492246
Ensembl peptide - ENSP00000492004
Ensembl peptide - ENSP00000491792
Ensembl peptide - ENSP00000491728
Ensembl peptide - ENSP00000491653
Ensembl peptide - ENSP00000491407
Ensembl peptide - ENSP00000491132
Ensembl peptide - ENSP00000420988
NCBI entrez gene - 950     See in Manteia.
OMIM - 602257
RefSeq - NM_005506
RefSeq - NM_001204255
RefSeq Peptide - NP_001191184
RefSeq Peptide - NP_005497
swissprot - A0A1W2PRS1
swissprot - A0A1W2PRF6
swissprot - A0A1W2PQR6
swissprot - A0A1W2PQL5
swissprot - A0A1W2PQB7
swissprot - A0A1W2PPX6
swissprot - A0A1W2PPX5
swissprot - A0A1W2PPU6
swissprot - A0A1W2PNX7
swissprot - A0A024RDG6
swissprot - D6RDG0
swissprot - Q14108
swissprot - A0A1W2PSE4
swissprot - A0A1W2PS70
swissprot - A0A1W2PS43
Ensembl - ENSG00000138760
  
Related genetic diseases (OMIM): 254900 - Epilepsy, progressive myoclonic 4, with or without renal failure, 254900
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 scarb2cENSDARG00000089844Danio rerio
 SCARB2ENSGALG00000011499Gallus gallus
 O35114ENSMUSG00000029426Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CD36 / P16671 / CD36 moleculeENSG0000013521832
Q8WTV0 / SCARB1 / scavenger receptor class B member 1ENSG0000007306032


Protein motifs (from Interpro)
Interpro ID Name
 IPR002159  CD36 family
 IPR005429  Lysosome membrane protein II


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001508 action potential ISS
 biological_processGO:0002532 production of molecular mediator involved in inflammatory response TAS
 biological_processGO:0006622 protein targeting to lysosome NAS
 biological_processGO:0006631 fatty acid metabolic process TAS
 biological_processGO:0006898 receptor-mediated endocytosis IEA
 biological_processGO:0006911 phagocytosis, engulfment TAS
 biological_processGO:0010976 positive regulation of neuron projection development ISS
 biological_processGO:0016032 viral process IEA
 biological_processGO:0031664 regulation of lipopolysaccharide-mediated signaling pathway TAS
 biological_processGO:0046718 viral entry into host cell IEA
 biological_processGO:0061024 membrane organization TAS
 biological_processGO:1904978 regulation of endosome organization TAS
 biological_processGO:1905123 regulation of glucosylceramidase activity IEA
 biological_processGO:1905671 regulation of lysosome organization TAS
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane TAS
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0009986 cell surface TAS
 cellular_componentGO:0010008 endosome membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030665 clathrin-coated vesicle membrane TAS
 cellular_componentGO:0031902 late endosome membrane TAS
 cellular_componentGO:0043202 lysosomal lumen ISS
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0001618 virus receptor activity IEA
 molecular_functionGO:0005044 scavenger receptor activity TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019899 enzyme binding IPI


Pathways (from Reactome)
Pathway description
Cargo recognition for clathrin-mediated endocytosis
Clathrin-mediated endocytosis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000093 Proteinuria 
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 HP:0000097 Focal segmental glomerulosclerosis 
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 HP:0000100 Nephrotic syndrome 
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 HP:0000112 Nephropathy "A nonspecific term referring to disease or damage of the kidneys." [HPO:curators]
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 HP:0000225 Gingival bleeding 
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 HP:0000726 Dementia 
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 HP:0000790 Hematuria "The presence of blood in the urine. Hematuria may be gross hematuria (visible to the naked eye) or microscopic hematuria (detected by dipstick or microscopic examination of the urine)." [HPO:curators]
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 HP:0000823 Delayed puberty 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000978 Ecchymoses 
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001272 Cerebellar atrophy 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001394 Cirrhosis 
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 HP:0001541 Ascites 
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 HP:0001637 Abnormality of the myocardium 
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 HP:0001698 Pericardial effusion 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001873 Thrombocytopenia 
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 HP:0001876 Pancytopenia 
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 HP:0001882 Leukopenia 
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 HP:0001903 Anemia 
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 HP:0001971 Hypersplenism 
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002027 Abdominal pain 
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 HP:0002039 Anorexia 
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002070 Limb ataxia 
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 HP:0002080 Intention tremor "An oscillatory cerebellar ataxia that tends to be absent when the limbs are inactive and during the first part of voluntary movement but worsening as the movement continues and greater precision is required (e.g., in touching a target such as the patient s nose or a physician s finger)." [HPO:curators]
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 HP:0002092 Pulmonary hypertension 
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 HP:0002174 Postural tremor "A type of tremors that is triggered by holding a limb in a fixed position." [HPO:curators]
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 HP:0002197 Generalized seizures "Recurrent generalized `seizures` (HP:0001250), that is seizures that affect both cerebral hemispheres from the start of the seizure, producing loss of consciousness." [HPO:probinson]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002392 EEG shows 3-4-Hz spike and multispike slow wave complexes 
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 HP:0002653 Bone pain 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002756 Pathologic fracture "A pathologic fracture occurs when a bone breaks in an area that is weakened secondary to another disease process such as tumor, infection, and certain inherited bone disorders. A pathologic fracture can occur without a degree of trauma required to cause fracture in healthy bone." [HPO:curators]
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 HP:0002758 Osteoarthritis 
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 HP:0002797 Osteolysis 
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 HP:0002808 Kyphosis 
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 HP:0002953 Vertebral compression fractures 
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 HP:0003678 Rapidly progressive 
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 HP:0005230 Biliary tract obstruction 
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 HP:0006530 Interstitial pulmonary disease 
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 HP:0007000 Morning myoclonic jerks 
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 HP:0010702 Increased immunoglobulin level "An abnormally increased level of immunoglobulin in blood." [HPO:probinson]
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 HP:0010741 Edema of the lower limbs 
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 HP:0010885 Aseptic necrosis "A disease where there is cellular death (necrosis) of bone components due to interruption of the blood supply." [HPO:sdoelken]
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 HP:0011001 Increased bone mineral density "An abnormal increase of bone mineral density, that is, of the amount of matter per cubic centimeter of bones which is often refered to as osteosclerosis. Osteosclerosis can be detected on radiological examination as an increased whiteness (density) of affected bones." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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