ENSMUSG00000038671


Mus musculus

Features
Gene ID: ENSMUSG00000038671
  
Biological name :Arfrp1
  
Synonyms : ADP-ribosylation factor-related protein 1 / Arfrp1 / Q8BXL7
  
Possible biological names infered from orthology : Q13795
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: H4
Gene start: 181357690
Gene end: 181365404
  
Corresponding Affymetrix probe sets: 10490672 (MoGene1.0st)   1425507_at (Mouse Genome 430 2.0 Array)   1425508_s_at (Mouse Genome 430 2.0 Array)   1434488_at (Mouse Genome 430 2.0 Array)   1451735_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000122066
Ensembl peptide - ENSMUSP00000138941
Ensembl peptide - ENSMUSP00000139211
Ensembl peptide - ENSMUSP00000104436
Ensembl peptide - ENSMUSP00000126387
NCBI entrez gene - 76688     See in Manteia.
MGI - MGI:1923938
RefSeq - XM_011239965
RefSeq - NM_001165991
RefSeq - NM_001165992
RefSeq - NM_001165995
RefSeq - NM_029702
RefSeq Peptide - NP_001159463
RefSeq Peptide - NP_001159464
RefSeq Peptide - NP_001159467
RefSeq Peptide - NP_083978
swissprot - Q80SX7
swissprot - Q8BXL7
swissprot - V9GX20
swissprot - E9PZK7
Ensembl - ENSMUSG00000038671
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 arfrp1ENSDARG00000057857Danio rerio
 ARFRP1ENSGALG00000006101Gallus gallus
 ARFRP1ENSG00000101246Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Arl13b / Q640N2 / ADP-ribosylation factor-like protein 13B / Q3SXY8* / ADP ribosylation factor like GTPase 13B*ENSMUSG0000002291130
Arl13a / Q9D416 / ADP-ribosylation factor-like protein 13A / Q5H913* / ADP ribosylation factor like GTPase 13A*ENSMUSG0000005254925


Protein motifs (from Interpro)
Interpro ID Name
 IPR005225  Small GTP-binding protein domain
 IPR006689  Small GTPase superfamily, ARF/SAR type
 IPR024156  Small GTPase superfamily, ARF type
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007369 gastrulation IMP
 biological_processGO:0034067 protein localization to Golgi apparatus IEA
 biological_processGO:0042147 retrograde transport, endosome to Golgi IEA
 biological_processGO:0043001 Golgi to plasma membrane protein transport IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005794 Golgi apparatus ISO
 cellular_componentGO:0005802 trans-Golgi network IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity ISO
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
Retrograde transport at the Trans-Golgi-Network


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0003085 abnormal egg cylinder morphology "anomaly in the transient cup-like structure of the epiblast that consists of a single layer of embryonic cells" [csmith:Cynthia L. Smith, Mouse Genome Informatics Curator]
Show

Allelic Composition: Alx4tm1Rwi/Alx4tm1Rwi
Genetic Background: involves: 129S6/SvEvTac * C57BL/6J

 MP:0005621 abnormal cell physiology "aberration in the vital processes of the cell " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, hdene:Howard Dene , Mouse Genome Informatics Curator]
Show

Allelic Composition: Alx4tm1Rwi/Alx4tm1Rwi
Genetic Background: involves: 129S6/SvEvTac * C57BL/6J

Allelic Composition: Arfrp1tm2Asch/Arfrp1tm2Asch,Tg(Vil1-cre)997Gum/?
Genetic Background: involves: C57BL/6 * SJL

 MP:0011091 complete prenatal lethality "death of all organisms of a given genotype in a population between fertilization and birth (Mus: approximately E18.5)" [MGI:csmith]
Show

Allelic Composition: Alx4tm1Rwi/Alx4tm1Rwi
Genetic Background: involves: 129S6/SvEvTac * C57BL/6J

 MP:0011207 absent ectoplacental cavity "absence of the closed space within the ectoplacental cone, formed by the fusion of the parts of the amniotic fold that separate it from the amniotic cavity" [ISBN:0-12-402035-6]
Show

Allelic Composition: Alx4tm1Rwi/Alx4tm1Rwi
Genetic Background: involves: 129S6/SvEvTac * C57BL/6J

 MP:0011209 absent extraembryonic coelom "absence of the fluid-filled spaces formed within the mass of extraembryonic mesoderm that later fuse to become a large extraembryonic cavity" [ISBN:0-12-402035-6, ISBN10:1405118660]
Show

Allelic Composition: Alx4tm1Rwi/Alx4tm1Rwi
Genetic Background: involves: 129S6/SvEvTac * C57BL/6J

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000060904 Arl1 / P61211 / ADP-ribosylation factor-like protein 1 / P40616* / ADP ribosylation factor like GTPase 1*  / complex






 

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