ENSMUSG00000039976


Mus musculus

Features
Gene ID: ENSMUSG00000039976
  
Biological name :Tbc1d16
  
Synonyms : Mus musculus TBC1 domain family, member 16 (Tbc1d16), transcript variant 2, mRNA. / Tbc1d16
  
Possible biological names infered from orthology : Q8TBP0 / TBC1 domain family member 16
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: E2
Gene start: 119143045
Gene end: 119228499
  
Corresponding Affymetrix probe sets: 10393628 (MoGene1.0st)   1435763_at (Mouse Genome 430 2.0 Array)   1442149_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000147182
Ensembl peptide - ENSMUSP00000048516
Ensembl peptide - ENSMUSP00000119431
NCBI entrez gene - 207592     See in Manteia.
MGI - MGI:2652878
RefSeq - XM_006532696
RefSeq - NM_001347625
RefSeq - NM_172443
RefSeq - XM_006532693
RefSeq - XM_006532694
RefSeq - XM_006532695
RefSeq Peptide - NP_001334554
RefSeq Peptide - NP_766031
swissprot - A2AFK9
swissprot - Q6PFC0
swissprot - A2ABG4
Ensembl - ENSMUSG00000039976
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbc1d16ENSDARG00000036994Danio rerio
 TBC1D16ENSGALG00000007054Gallus gallus
 Q8TBP0ENSG00000167291Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9CXF4 / Tbc1d15 / TBC1 domain family member 15 / Q8TC07*ENSMUSG0000002013021
Q8BYH7 / Tbc1d17 / TBC1 domain family, member 17 / Q9HA65*ENSMUSG0000003852021
Sgsm1 / Q8BPQ7 / Small G protein signaling modulator 1 / Q2NKQ1*ENSMUSG0000004221618
Sgsm2 / Q80U12 / Small G protein signaling modulator 2 / O43147*ENSMUSG0000003835117
A1A5B6 / Tbc1d25 / TBC1 domain family member 25 / Q3MII6*ENSMUSG0000003920117


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain
 IPR035969  Rab-GTPase-TBC domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001919 regulation of receptor recycling ISO
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0043547 positive regulation of GTPase activity IEA
 biological_processGO:0090630 activation of GTPase activity IBA
 cellular_componentGO:0005622 intracellular IBA
 cellular_componentGO:0005769 early endosome ISO
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0012505 endomembrane system IBA
 molecular_functionGO:0005096 GTPase activator activity ISO
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
TBC/RABGAPs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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