ENSMUSG00000039201


Mus musculus

Features
Gene ID: ENSMUSG00000039201
  
Biological name :Tbc1d25
  
Synonyms : A1A5B6 / Tbc1d25 / TBC1 domain family member 25
  
Possible biological names infered from orthology : Q3MII6
  
Species: Mus musculus
  
Chr. number: X
Strand: -1
Band: A1.1
Gene start: 8154472
Gene end: 8176181
  
Corresponding Affymetrix probe sets: 10603478 (MoGene1.0st)   1456113_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000131652
Ensembl peptide - ENSMUSP00000138768
Ensembl peptide - ENSMUSP00000047838
NCBI entrez gene - 209815     See in Manteia.
MGI - MGI:2444862
RefSeq - NM_172478
RefSeq - XM_006527579
RefSeq - NM_001166437
RefSeq Peptide - NP_001159909
RefSeq Peptide - NP_766066
swissprot - A1A5B6
swissprot - S4R2S6
swissprot - E9PWX7
Ensembl - ENSMUSG00000039201
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tbc1d25ENSDARG00000075333Danio rerio
 Q3MII6ENSG00000068354Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9CXF4 / Tbc1d15 / TBC1 domain family member 15 / Q8TC07*ENSMUSG0000002013022
Q8BYH7 / Tbc1d17 / TBC1 domain family, member 17 / Q9HA65*ENSMUSG0000003852021
Sgsm1 / Q8BPQ7 / Small G protein signaling modulator 1 / Q2NKQ1*ENSMUSG0000004221618
Sgsm2 / Q80U12 / Small G protein signaling modulator 2 / O43147*ENSMUSG0000003835117
Tbc1d16 / Mus musculus TBC1 domain family, member 16 (Tbc1d16), transcript variant 2, mRNA. / Q8TBP0* / TBC1 domain family member 16*ENSMUSG0000003997617


Protein motifs (from Interpro)
Interpro ID Name
 IPR000195  Rab-GTPase-TBC domain
 IPR035969  Rab-GTPase-TBC domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006886 intracellular protein transport IBA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0031338 regulation of vesicle fusion IBA
 biological_processGO:0090630 activation of GTPase activity IBA
 biological_processGO:1901096 regulation of autophagosome maturation IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005776 autophagosome ISO
 cellular_componentGO:0012505 endomembrane system IBA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 molecular_functionGO:0005096 GTPase activator activity IBA
 molecular_functionGO:0017137 Rab GTPase binding IBA


Pathways (from Reactome)
Pathway description
TBC/RABGAPs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000018567 Q9DCD6 / Gabarap / Gamma-aminobutyric acid receptor-associated protein / O95166* / GABA type A receptor-associated protein*  / reaction / complex
 ENSMUSG00000031950 P60521 / Gabarapl2 / Gamma-aminobutyric acid receptor-associated protein-like 2 / P60520* / GABA type A receptor associated protein like 2*  / complex / reaction
 ENSMUSG00000031812 Q9CQV6 / Map1lc3b / Microtubule-associated proteins 1A/1B light chain 3B / A6NCE7* / Q9GZQ8* / MAP1LC3B2* / microtubule associated protein 1 light chain 3 beta* / microtubule associated pr...  / complex / reaction






 

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