ENSMUSG00000042535


Mus musculus

Features
Gene ID: ENSMUSG00000042535
  
Biological name :Gtpbp1
  
Synonyms : GTP-binding protein 1 / Gtpbp1 / O08582
  
Possible biological names infered from orthology : O00178
  
Species: Mus musculus
  
Chr. number: 15
Strand: 1
Band: E1
Gene start: 79690845
Gene end: 79721479
  
Corresponding Affymetrix probe sets: 10425302 (MoGene1.0st)   1450022_at (Mouse Genome 430 2.0 Array)   1450023_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000155748
Ensembl peptide - ENSMUSP00000043575
Ensembl peptide - ENSMUSP00000154947
Ensembl peptide - ENSMUSP00000155128
Ensembl peptide - ENSMUSP00000155592
Ensembl peptide - ENSMUSP00000155617
Ensembl peptide - ENSMUSP00000155719
NCBI entrez gene - 14904     See in Manteia.
MGI - MGI:109443
RefSeq - NM_013818
RefSeq - XM_006520450
RefSeq Peptide - NP_038846
swissprot - O08582
Ensembl - ENSMUSG00000042535
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gtpbp1ENSDARG00000053467Danio rerio
 gtpbp1lENSDARG00000042900Danio rerio
 GTPBP1ENSGALG00000030783Gallus gallus
 GTPBP1ENSG00000100226Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Gtpbp2 / Q3UJK4 / GTP-binding protein 2 / Q9BX10*ENSMUSG0000002395240


Protein motifs (from Interpro)
Interpro ID Name
 IPR000795  Transcription factor, GTP-binding domain
 IPR009000  Translation protein, beta-barrel domain superfamily
 IPR009001  Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR035531  GTP binding protein 1-like, GTP-binding domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0046039 GTP metabolic process IEA
 biological_processGO:0061014 positive regulation of mRNA catabolic process IEA
 cellular_componentGO:0000177 cytoplasmic exosome (RNase complex) IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003924 GTPase activity IEA
 molecular_functionGO:0005525 GTP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Tnfsf13btm1Msc/Tnfsf13b+
Genetic Background: involves: 129S2/SvPas * C57BL/6

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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