ENSMUSG00000043719


Mus musculus

Features
Gene ID: ENSMUSG00000043719
  
Biological name :Col6a6
  
Synonyms : Col6a6 / Collagen alpha-6(VI) chain / Q8C6K9
  
Possible biological names infered from orthology : A6NMZ7 / collagen type VI alpha 6 chain
  
Species: Mus musculus
  
Chr. number: 9
Strand: -1
Band: F1
Gene start: 105687809
Gene end: 105828160
  
Corresponding Affymetrix probe sets: 10596383 (MoGene1.0st)   10596394 (MoGene1.0st)   
  
Cross references: Ensembl peptide - ENSMUSP00000060840
Ensembl peptide - ENSMUSP00000096040
Ensembl peptide - ENSMUSP00000125765
NCBI entrez gene - 245026     See in Manteia.
MGI - MGI:2444259
RefSeq - XM_006511733
RefSeq - NM_001102607
RefSeq - NM_172927
RefSeq - XM_006511732
RefSeq Peptide - NP_766515
RefSeq Peptide - NP_001096077
swissprot - Q8C6K9
swissprot - E9Q6A6
Ensembl - ENSMUSG00000043719
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-62a1.3ENSDARG00000112419Danio rerio
 A6NMZ7ENSG00000206384Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Col6a5 / collagen type VI alpha 5 chain / A8TX70*ENSMUSG0000009134553
Col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain*ENSMUSG0000004812631
A2AX52 / Col6a4 / Collagen alpha-4(VI) chain ENSMUSG0000003257231
Col7a1 / Q63870 / Collagen alpha-1(VII) chain / Q02388* / collagen type VII alpha 1 chain*ENSMUSG0000002565016
Q60847 / Col12a1 / Collagen alpha-1(XII) chain / Q99715* / collagen type XII alpha 1 chain*ENSMUSG0000003233214
Q80X19 / Col14a1 / Collagen alpha-1(XIV) chain / Q05707* / collagen type XIV alpha 1 chain*ENSMUSG0000002237113
Q923P0 / Col20a1 / Collagen alpha-1(XX) chain / Q9P218* / collagen type XX alpha 1 chain*ENSMUSG000000163568
Vit / Q8VHI5 / vitrin / Q6UXI7*ENSMUSG000000240767
Vwa2 / Q70UZ7 / von Willebrand factor A domain containing 2 / Q5GFL6*ENSMUSG000000250826
Coch / Q62507 / Cochlin / O43405*ENSMUSG000000209535


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0031012 extracellular matrix ISO
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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