ENSMUSG00000091345


Mus musculus

Features
Gene ID: ENSMUSG00000091345
  
Biological name :Col6a5
  
Synonyms : Col6a5 / collagen type VI alpha 5 chain
  
Possible biological names infered from orthology : A8TX70
  
Species: Mus musculus
  
Chr. number: 9
Strand: -1
Band: F1
Gene start: 105856078
Gene end: 105960643
  
Corresponding Affymetrix probe sets: 10596403 (MoGene1.0st)   10596409 (MoGene1.0st)   1446685_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000131146
Ensembl peptide - ENSMUSP00000139398
NCBI entrez gene - 665033     See in Manteia.
MGI - MGI:3648134
RefSeq - NM_001167923
RefSeq Peptide - NP_001161395
swissprot - A0A140T8W1
swissprot - A0A140T8T7
Ensembl - ENSMUSG00000091345
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-62a1.3ENSDARG00000112419Danio rerio
 A8TX70ENSG00000172752Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Col6a6 / Q8C6K9 / Collagen alpha-6(VI) chain / A6NMZ7* / collagen type VI alpha 6 chain*ENSMUSG0000004371945
Col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain*ENSMUSG0000004812626
A2AX52 / Col6a4 / Collagen alpha-4(VI) chain ENSMUSG0000003257226
Col7a1 / Q63870 / Collagen alpha-1(VII) chain / Q02388* / collagen type VII alpha 1 chain*ENSMUSG0000002565015
Q80X19 / Col14a1 / Collagen alpha-1(XIV) chain / Q05707* / collagen type XIV alpha 1 chain*ENSMUSG0000002237112
Q60847 / Col12a1 / Collagen alpha-1(XII) chain / Q99715* / collagen type XII alpha 1 chain*ENSMUSG0000003233212
Q923P0 / Col20a1 / Collagen alpha-1(XX) chain / Q9P218* / collagen type XX alpha 1 chain*ENSMUSG000000163567
Vit / Q8VHI5 / vitrin / Q6UXI7*ENSMUSG000000240766
Coch / Q62507 / Cochlin / O43405*ENSMUSG000000209535
Vwa2 / Q70UZ7 / von Willebrand factor A domain containing 2 / Q5GFL6*ENSMUSG000000250825


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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