ENSG00000172752


Homo sapiens

Features
Gene ID: ENSG00000172752
  
Biological name :COL6A5
  
Synonyms : A8TX70 / COL6A5 / collagen type VI alpha 5 chain
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q22.1
Gene start: 130345516
Gene end: 130484844
  
Corresponding Affymetrix probe sets: 1553834_at (Human Genome U133 Plus 2.0 Array)   1553835_a_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000424968
Ensembl peptide - ENSP00000309762
Ensembl peptide - ENSP00000362250
Ensembl peptide - ENSP00000422898
Ensembl peptide - ENSP00000265379
NCBI entrez gene - 256076     See in Manteia.
OMIM - 611916
RefSeq - XM_011512623
RefSeq - NM_001278298
RefSeq - NM_153264
RefSeq - XM_011512621
RefSeq - XM_011512622
RefSeq Peptide - NP_694996
RefSeq Peptide - NP_001265227
swissprot - H0Y393
swissprot - H0Y935
swissprot - H0Y9T2
swissprot - E9PAL5
swissprot - A8TX70
Ensembl - ENSG00000172752
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-62a1.3ENSDARG00000112419Danio rerio
 Col6a5ENSMUSG00000091345Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A6NMZ7 / COL6A6 / collagen type VI alpha 6 chainENSG0000020638447
COL6A3 / P12111 / collagen type VI alpha 3 chainENSG0000016335927
COL7A1 / Q02388 / collagen type VII alpha 1 chainENSG0000011427014
Q05707 / COL14A1 / collagen type XIV alpha 1 chainENSG0000018795512
Q99715 / COL12A1 / collagen type XII alpha 1 chainENSG0000011179912
Q9P218 / COL20A1 / collagen type XX alpha 1 chainENSG000001012037
VIT / Q6UXI7 / vitrinENSG000002052216
VWA2 / Q5GFL6 / von Willebrand factor A domain containing 2ENSG000001658165
COCH / O43405 / cochlinENSG000001004735


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0030574 collagen catabolic process TAS
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0031012 extracellular matrix ISS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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