ENSG00000163359


Homo sapiens

Features
Gene ID: ENSG00000163359
  
Biological name :COL6A3
  
Synonyms : COL6A3 / collagen type VI alpha 3 chain / P12111
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q37.3
Gene start: 237324003
Gene end: 237414375
  
Corresponding Affymetrix probe sets: 201438_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000386844
Ensembl peptide - ENSP00000375861
Ensembl peptide - ENSP00000389539
Ensembl peptide - ENSP00000460277
Ensembl peptide - ENSP00000418285
Ensembl peptide - ENSP00000295550
Ensembl peptide - ENSP00000315609
Ensembl peptide - ENSP00000315873
Ensembl peptide - ENSP00000375860
NCBI entrez gene - 1293     See in Manteia.
OMIM - 120250
RefSeq - XM_017003304
RefSeq - NM_004369
RefSeq - NM_057164
RefSeq - NM_057165
RefSeq - NM_057166
RefSeq - NM_057167
RefSeq - XM_005246065
RefSeq - XM_005246066
RefSeq - XM_006712253
RefSeq - XM_011510574
RefSeq - XM_017003303
RefSeq Peptide - NP_476505
RefSeq Peptide - NP_476506
RefSeq Peptide - NP_476507
RefSeq Peptide - NP_476508
RefSeq Peptide - NP_004360
swissprot - E7ENL6
swissprot - D9ZGF2
swissprot - I3L392
swissprot - P12111
swissprot - C9JNG9
Ensembl - ENSG00000163359
  
Related genetic diseases (OMIM): 158810 - Bethlem myopathy 1, 158810
  254090 - Ullrich congenital muscular dystrophy 1, 254090
  616411 - Dystonia 27, 616411
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col6a3ENSDARG00000095915Danio rerio
 col6a3ENSDARG00000077139Danio rerio
 COL6A3ENSGALG00000003923Gallus gallus
 Col6a3ENSMUSG00000048126Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
A6NMZ7 / COL6A6 / collagen type VI alpha 6 chainENSG0000020638423
A8TX70 / COL6A5 / collagen type VI alpha 5 chainENSG0000017275222
COL7A1 / Q02388 / collagen type VII alpha 1 chainENSG0000011427015
Q99715 / COL12A1 / collagen type XII alpha 1 chainENSG0000011179915
Q05707 / COL14A1 / collagen type XIV alpha 1 chainENSG0000018795511
Q9P218 / COL20A1 / collagen type XX alpha 1 chainENSG000001012037
VIT / Q6UXI7 / vitrinENSG000002052215
COCH / O43405 / cochlinENSG000001004734
VWA2 / Q5GFL6 / von Willebrand factor A domain containing 2ENSG000001658164


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR002223  Pancreatic trypsin inhibitor Kunitz domain
 IPR003961  Fibronectin type III
 IPR008160  Collagen triple helix repeat
 IPR013783  Immunoglobulin-like fold
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR020901  Proteinase inhibitor I2, Kunitz, conserved site
 IPR036116  Fibronectin type III superfamily
 IPR036465  von Willebrand factor A-like domain superfamily
 IPR036880  Pancreatic trypsin inhibitor Kunitz domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007517 muscle organ development TAS
 biological_processGO:0010466 negative regulation of peptidase activity IEA
 biological_processGO:0010951 negative regulation of endopeptidase activity IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030574 collagen catabolic process TAS
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005589 collagen type VI trimer TAS
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix ISS
 cellular_componentGO:0042383 sarcolemma IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:1903561 extracellular vesicle HDA
 molecular_functionGO:0004867 serine-type endopeptidase inhibitor activity IEA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030414 peptidase inhibitor activity IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000174 Abnormality of palate "Any abnormality of the `palate` (FMA:54549), i.e., of roof of the mouth)." [HPO:probinson]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000311 Round face "An unusually round appearance of the face." [HPO:curators]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000411 Protruding ears 
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 HP:0000470 Short neck 
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 HP:0000473 Torticollis 
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 HP:0000565 Esotropia 
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 HP:0000975 Hyperhidrosis "An abnormally increased perspiration." [HPO:probinson]
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 HP:0001181 Adducted thumbs 
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 HP:0001238 Slender fingers "Digits are disproportionaly narrow (reduced girth)." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001388 Joint laxity 
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 HP:0001508 Failure to thrive 
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 HP:0001533 Asthenic habitus "Asthenic habitus refers to a slender build with long limbs, an angular profile, and prominent muscles or bones." [HPO:curators]
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001626 Abnormality of the cardiovascular system "Any abnormality of the heart or vasculature." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002174 Postural tremor "A type of tremors that is triggered by holding a limb in a fixed position." [HPO:curators]
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 HP:0002356 Writer s cramp 
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 HP:0002359 Frequent falls 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0002783 Recurrent lower respiratory tract infections 
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 HP:0002808 Kyphosis 
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 HP:0002827 Dislocated hips 
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 HP:0002877 Nocturnal hypoventilation 
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 HP:0002878 Early respiratory failure 
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 HP:0002987 Elbow contractures 
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 HP:0003198 Myopathy 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003306 Spinal rigidity 
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003325 Limb-girdle muscle weakness "Weakness of the limb-girdle muscles (also known as the pelvic and shoulder girdles), that is, lack of strength of the muscles around the shoulders and the pelvis." [HPO:curators]
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003557 Increased variability in muscle fiber size "An abnormally high degree of muscle fiber size variation. This phenotypic feature can be observed upon muscle biopsy." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0003676 Progressive disorder 
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 HP:0003677 Slow progression 
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 HP:0003700 Generalized amyotrophy "Generalized wasting of loss of muscle tissue." [HPO:curators]
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0003713 Muscle fiber necrosis "Abnormal cell death involving muscle fibers usually associated with break in, or absence of, muscle surface fiber membrane and resulting in irreversible damage to muscle fibers." [HPO:curators]
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 HP:0003741 Congenital muscular dystrophy 
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 HP:0003803 Type 1 muscle fiber predominance "An abnormal predominance of type I muscle fibers (in general, this feature can only be observed on muscle biopsy)." [HPO:curators]
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 HP:0003828 Variable expressivity 
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 HP:0004326 Cachexia 
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 HP:0005072 Hyperextensibility at wrists "The ability of the wrist joints to move beyond their normal range of motion." [HPO:curators]
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 HP:0005988 Torticollis, congenital 
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 HP:0006149 Increased laxity of fingers 
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 HP:0006380 Knee flexion deformities 
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 HP:0006460 Increased laxity of ankles 
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 HP:0006466 Contractures of the ankles 
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 HP:0007502 Follicular hyperkeratosis 
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 HP:0008081 Valgus foot deformity 
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 HP:0008180 Mildly elevated creatine phosphokinase 
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 HP:0008872 Feeding problems in infancy 
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 HP:0009113 Diaphragmatic weakness 
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 HP:0010511 Increased length of toes "The presence of abnormally long toes." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0012048 Oromandibular dystonia "A kind of focal dystonia characterized by forceful contractions of the face, jaw, and/or tongue causing difficulty in opening and closing the mouth and often affecting chewing and speech." [HPO:probinson]
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 HP:0012049 Laryngeal dystonia "A form of focal dystonia that affects the vocal cords, associated with involuntary contractions of the vocal cords causing interruptions of speech and affecting the voice quality and often leading to patterned, repeated breaks in speech." [HPO:probinson]
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 HP:0100297 Increased endomysial connective tissue 
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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