ENSGALG00000003923


Gallus gallus

Features
Gene ID: ENSGALG00000003923
  
Biological name :COL6A3
  
Synonyms : COL6A3 / collagen type VI alpha 3 chain
  
Possible biological names infered from orthology : collagen, type VI, alpha 3 / P12111
  
Species: Gallus gallus
  
Chr. number: 7
Strand: 1
Band:
Gene start: 4808259
Gene end: 4861524
  
Corresponding Affymetrix probe sets: Gga.888.1.S1_at (Chicken Array)   Gga.888.2.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000051856
Ensembl peptide - ENSGALP00000006240
NCBI entrez gene - 396548     See in Manteia.
RefSeq - XM_015289155
RefSeq - XM_015289152
RefSeq - XM_015289153
RefSeq - XM_015289154
RefSeq - NM_205534
RefSeq - XM_015289143
RefSeq - XM_015289144
RefSeq - XM_015289145
RefSeq - XM_015289146
RefSeq - XM_015289147
RefSeq - XM_015289148
RefSeq - XM_015289149
RefSeq - XM_015289150
RefSeq - XM_015289151
RefSeq Peptide - NP_990865
swissprot - F1P2F0
swissprot - A0A1D5PGD5
Ensembl - ENSGALG00000003923
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col6a3ENSDARG00000095915Danio rerio
 col6a3ENSDARG00000077139Danio rerio
 COL6A3ENSG00000163359Homo sapiens
 Col6a3ENSMUSG00000048126Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL12A1 / collagen type XII alpha 1 chain / Q60847* / Q99715* / Collagen alpha-1(XII) chain *ENSGALG0000001590814
COL14A1 / collagen alpha-1(XIV) chain precursor / Q80X19* / Q05707* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSGALG0000003767511
COL20A1 / collagen type XX alpha 1 chain / Q923P0* / Q9P218* / Collagen alpha-1(XX) chain *ENSGALG000000057977
ENSGALG000000358545
VIT / vitrin precursor / Q6UXI7* / Q8VHI5* / vitrin*ENSGALG000000105835
VWA2 / von Willebrand factor A domain containing 2 / Q5GFL6* / Q70UZ7*ENSGALG000000089804
COCH / O42163 / Cochlin / O43405* / Q62507*ENSGALG000000099204
COL7A1* / Q02388* / Q63870* / Collagen alpha-1(VII) chain * / collagen type VII alpha 1 chain*ENSGALG000000058114


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A
 IPR002223  Pancreatic trypsin inhibitor Kunitz domain
 IPR003961  Fibronectin type III
 IPR008160  Collagen triple helix repeat
 IPR013783  Immunoglobulin-like fold
 IPR020901  Proteinase inhibitor I2, Kunitz, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0010951 negative regulation of endopeptidase activity IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0031012 extracellular matrix IEA
 cellular_componentGO:0042383 sarcolemma IEA
 molecular_functionGO:0004867 serine-type endopeptidase inhibitor activity IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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