ENSGALG00000015908


Gallus gallus

Features
Gene ID: ENSGALG00000015908
  
Biological name :COL12A1
  
Synonyms : COL12A1 / collagen type XII alpha 1 chain
  
Possible biological names infered from orthology : Collagen alpha-1(XII) chain / Q60847 / Q99715
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 81088530
Gene end: 81188721
  
Corresponding Affymetrix probe sets: Gga.4965.1.S1_at (Chicken Array)   Gga.4965.1.S1_a_at (Chicken Array)   Gga.4965.2.S1_at (Chicken Array)   Gga.4965.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000025593
Ensembl peptide - ENSGALP00000063896
Ensembl peptide - ENSGALP00000060841
Ensembl peptide - ENSGALP00000049036
Ensembl peptide - ENSGALP00000048727
NCBI entrez gene - 395875     See in Manteia.
RefSeq - XM_015284739
RefSeq - XM_015284744
RefSeq - XM_015284743
RefSeq - XM_015284742
RefSeq - XM_015284740
RefSeq - NM_205021
RefSeq Peptide - NP_990352
swissprot - A0A1L1RYG2
swissprot - F1NX22
swissprot - A0A1D5P7N6
swissprot - A0A1D5P8I8
swissprot - A0A1L1RPW4
Ensembl - ENSGALG00000015908
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col12a1aENSDARG00000078322Danio rerio
 col12a1bENSDARG00000019601Danio rerio
 Q99715ENSG00000111799Homo sapiens
 Q60847ENSMUSG00000032332Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL14A1 / collagen alpha-1(XIV) chain precursor / Q80X19* / Q05707* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSGALG0000003767528
COL20A1 / collagen type XX alpha 1 chain / Q923P0* / Q9P218* / Collagen alpha-1(XX) chain *ENSGALG0000000579717
COL6A3 / collagen type VI alpha 3 chain / P12111* / collagen, type VI, alpha 3*ENSGALG0000000392314
COL7A1* / Q02388* / Q63870* / Collagen alpha-1(VII) chain * / collagen type VII alpha 1 chain*ENSGALG000000058118
VWA2 / von Willebrand factor A domain containing 2 / Q5GFL6* / Q70UZ7*ENSGALG000000089806
COCH / O42163 / Cochlin / O43405* / Q62507*ENSGALG000000099203
VIT / vitrin precursor / Q6UXI7* / Q8VHI5* / vitrin*ENSGALG000000105833
ENSGALG000000358541


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002035  von Willebrand factor, type A
 IPR003961  Fibronectin type III
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0035987 endodermal cell differentiation IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0031012 extracellular matrix IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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