ENSG00000111799


Homo sapiens

Features
Gene ID: ENSG00000111799
  
Biological name :COL12A1
  
Synonyms : COL12A1 / collagen type XII alpha 1 chain / Q99715
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: q14.1
Gene start: 75084326
Gene end: 75206051
  
Corresponding Affymetrix probe sets: 225664_at (Human Genome U133 Plus 2.0 Array)   231766_s_at (Human Genome U133 Plus 2.0 Array)   231879_at (Human Genome U133 Plus 2.0 Array)   233109_at (Human Genome U133 Plus 2.0 Array)   234951_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000421216
Ensembl peptide - ENSP00000412864
Ensembl peptide - ENSP00000423423
Ensembl peptide - ENSP00000483232
Ensembl peptide - ENSP00000305147
Ensembl peptide - ENSP00000325146
Ensembl peptide - ENSP00000393217
Ensembl peptide - ENSP00000399812
NCBI entrez gene - 1303     See in Manteia.
OMIM - 120320
RefSeq - XM_017010252
RefSeq - NM_004370
RefSeq - NM_080645
RefSeq - XM_011535434
RefSeq - XM_011535435
RefSeq - XM_011535436
RefSeq Peptide - NP_542376
RefSeq Peptide - NP_004361
swissprot - H0Y4P7
swissprot - H0Y5N9
swissprot - H0Y991
swissprot - A0A087X0A8
swissprot - Q99715
swissprot - D6RGG3
Ensembl - ENSG00000111799
  
Related genetic diseases (OMIM): 616470 - ?Ullrich congenital muscular dystrophy 2, 616470
  616471 - Bethlem myopathy 2, 616471
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col12a1aENSDARG00000078322Danio rerio
 col12a1bENSDARG00000019601Danio rerio
 COL12A1ENSGALG00000015908Gallus gallus
 Q60847ENSMUSG00000032332Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q05707 / COL14A1 / collagen type XIV alpha 1 chainENSG0000018795528
COL7A1 / Q02388 / collagen type VII alpha 1 chainENSG0000011427017
Q9P218 / COL20A1 / collagen type XX alpha 1 chainENSG0000010120315
COL6A3 / P12111 / collagen type VI alpha 3 chainENSG0000016335915
A6NMZ7 / COL6A6 / collagen type VI alpha 6 chainENSG0000020638411
A8TX70 / COL6A5 / collagen type VI alpha 5 chainENSG0000017275210
VWA2 / Q5GFL6 / von Willebrand factor A domain containing 2ENSG000001658166
VIT / Q6UXI7 / vitrinENSG000002052214
COCH / O43405 / cochlinENSG000001004733


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002035  von Willebrand factor, type A
 IPR003961  Fibronectin type III
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold
 IPR016133  Insect cysteine-rich antifreeze protein
 IPR036116  Fibronectin type III superfamily
 IPR036465  von Willebrand factor A-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development TAS
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0030199 collagen fibril organization NAS
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0035987 endodermal cell differentiation IEP
 cellular_componentGO:0005576 extracellular region IDA
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005595 collagen type XII trimer TAS
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0031012 extracellular matrix IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 cellular_componentGO:1903561 extracellular vesicle HDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030020 extracellular matrix structural constituent conferring tensile strength NAS


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000174 Abnormality of palate "Any abnormality of the `palate` (FMA:54549), i.e., of roof of the mouth)." [HPO:probinson]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000470 Short neck 
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 HP:0000473 Torticollis 
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 HP:0000565 Esotropia 
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 HP:0001181 Adducted thumbs 
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 HP:0001238 Slender fingers "Digits are disproportionaly narrow (reduced girth)." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001284 Areflexia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001371 Contractures 
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0002093 Respiratory insufficiency 
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 HP:0002359 Frequent falls 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002751 Kyphoscoliosis 
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 HP:0002808 Kyphosis 
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 HP:0002827 Dislocated hips 
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 HP:0002878 Early respiratory failure 
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 HP:0002987 Elbow contractures 
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 HP:0003198 Myopathy 
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003306 Spinal rigidity 
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003557 Increased variability in muscle fiber size "An abnormally high degree of muscle fiber size variation. This phenotypic feature can be observed upon muscle biopsy." [HPO:curators]
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 HP:0003700 Generalized amyotrophy "Generalized wasting of loss of muscle tissue." [HPO:curators]
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 HP:0003741 Congenital muscular dystrophy 
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 HP:0004326 Cachexia 
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 HP:0005072 Hyperextensibility at wrists "The ability of the wrist joints to move beyond their normal range of motion." [HPO:curators]
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 HP:0006149 Increased laxity of fingers 
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 HP:0006380 Knee flexion deformities 
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 HP:0008081 Valgus foot deformity 
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 HP:0009113 Diaphragmatic weakness 
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 HP:0010511 Increased length of toes "The presence of abnormally long toes." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0100297 Increased endomysial connective tissue 
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 HP:0100490 Camptodactyly (hands) "Contractures of one ore more joints of the fingers." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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