ENSDARG00000078322


Danio rerio

Features
Gene ID: ENSDARG00000078322
  
Biological name :col12a1a
  
Synonyms : col12a1a / collagen, type XII, alpha 1a
  
Possible biological names infered from orthology : COL12A1 / Collagen alpha-1(XII) chain / collagen type XII alpha 1 chain / Q60847 / Q99715
  
Species: Danio rerio
  
Chr. number: 17
Strand: -1
Band:
Gene start: 49785495
Gene end: 49978986
  
Corresponding Affymetrix probe sets: Dr.4001.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000128902
Ensembl peptide - ENSDARP00000128992
Ensembl peptide - ENSDARP00000156139
swissprot - X1WF98
swissprot - X1WFI8
ZFIN ID - ZDB-GENE-090728-1
Ensembl - ENSDARG00000078322
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL12A1ENSGALG00000015908Gallus gallus
 Q99715ENSG00000111799Homo sapiens
 Q60847ENSMUSG00000032332Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col12a1b / collagen, type XII, alpha 1b / Q99715* / Q60847* / COL12A1* / Collagen alpha-1(XII) chain * / collagen type XII alpha 1 chain*ENSDARG0000001960172
col14a1a / collagen, type XIV, alpha 1a / Q80X19* / Q05707* / COL14A1* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSDARG0000000576227
col7a1 / collagen, type VII, alpha 1 / Q63870* / Q02388* / Collagen alpha-1(VII) chain * / collagen type VII alpha 1 chain*ENSDARG0000002172015
col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain*ENSDARG0000007713914
col7a1l / collagen type VII alpha 1-likeENSDARG0000006969213
col6a4a / collagen, type VI, alpha 4a / A2AX52* / Col6a4* / Collagen alpha-4(VI) chain *ENSDARG0000007975211
col14a1b / collagen, type XIV, alpha 1b / Q80X19* / Q05707* / COL14A1* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSDARG0000007662310
vwa2 / von Willebrand factor A domain containing 2 / Q5GFL6* / Q70UZ7*ENSDARG000000754416
si:ch211-62a1.3 / COL6A5* / COL6A6* / A6NMZ7* / A8TX70* / Q8C6K9* / Collagen alpha-6(VI) chain * / collagen type VI alpha 5 chain* / collagen type VI alpha 6 chain*ENSDARG000001124196
col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain*ENSDARG000000959156
ch1073-291c23.1 / VIT* / Q6UXI7* / Q8VHI5* / vitrin*ENSDARG000000636314
coch / coagulation factor C homolog, cochlin (Limulus polyphemus) / O43405* / Q62507* / cochlin*ENSDARG000000240323


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR002035  von Willebrand factor, type A
 IPR003961  Fibronectin type III
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily
 IPR013783  Immunoglobulin-like fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0031099 regeneration IGI
 biological_processGO:0048679 regulation of axon regeneration IGI


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Assembly of collagen fibrils and other multimeric structures
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr