ENSDARG00000095915


Danio rerio

Features
Gene ID: ENSDARG00000095915
  
Biological name :col6a3
  
Synonyms : col6a3 / collagen, type VI, alpha 3
  
Possible biological names infered from orthology : collagen type VI alpha 3 chain / P12111
  
Species: Danio rerio
  
Chr. number: 9
Strand: -1
Band:
Gene start: 23983866
Gene end: 23994225
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000122802
swissprot - F6NRG0
ZFIN ID - ZDB-GENE-070501-8
Ensembl - ENSDARG00000095915
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL6A3ENSGALG00000003923Gallus gallus
 COL6A3ENSG00000163359Homo sapiens
 Col6a3ENSMUSG00000048126Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col6a3 / collagen, type VI, alpha 3 / P12111* / collagen type VI alpha 3 chain*ENSDARG0000007713935
col12a1b / collagen, type XII, alpha 1b / Q99715* / Q60847* / COL12A1* / Collagen alpha-1(XII) chain * / collagen type XII alpha 1 chain*ENSDARG0000001960120
col12a1a / collagen, type XII, alpha 1a / Q99715* / Q60847* / COL12A1* / Collagen alpha-1(XII) chain * / collagen type XII alpha 1 chain*ENSDARG0000007832220
col6a4a / collagen, type VI, alpha 4a / A2AX52* / Col6a4* / Collagen alpha-4(VI) chain *ENSDARG0000007975218
col14a1a / collagen, type XIV, alpha 1a / Q80X19* / Q05707* / COL14A1* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSDARG0000000576216
vwa2 / von Willebrand factor A domain containing 2 / Q5GFL6* / Q70UZ7*ENSDARG0000007544114
col7a1 / collagen, type VII, alpha 1 / Q63870* / Q02388* / Collagen alpha-1(VII) chain * / collagen type VII alpha 1 chain*ENSDARG0000002172012
col7a1l / collagen type VII alpha 1-likeENSDARG0000006969212
col14a1b / collagen, type XIV, alpha 1b / Q80X19* / Q05707* / COL14A1* / Collagen alpha-1(XIV) chain * / collagen type XIV alpha 1 chain*ENSDARG000000766237
ch1073-291c23.1 / VIT* / Q6UXI7* / Q8VHI5* / vitrin*ENSDARG000000636317
coch / coagulation factor C homolog, cochlin (Limulus polyphemus) / O43405* / Q62507* / cochlin*ENSDARG000000240326
si:ch211-62a1.3 / COL6A5* / COL6A6* / A6NMZ7* / A8TX70* / Q8C6K9* / Collagen alpha-6(VI) chain * / collagen type VI alpha 5 chain* / collagen type VI alpha 6 chain*ENSDARG000001124196


Protein motifs (from Interpro)
Interpro ID Name
 IPR002035  von Willebrand factor, type A


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008045 motor neuron axon guidance IMP
 biological_processGO:0048675 axon extension IMP


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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